Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64905.1 68418.m08164 expressed protein                             29   4.3  
At2g30470.1 68415.m03711 transcriptional factor B3 family protei...    28   7.6  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   10.0 

>At5g64905.1 68418.m08164 expressed protein
          Length = 96

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 329 NLLPGSFSSDSQVTLPKLSTARYLSSVTSSRSC 231
           +L+P +F   S VT+P L  +   SS +SS SC
Sbjct: 12  SLIPFTFFDQSSVTIPLLKCSGLESSSSSSSSC 44


>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 790

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 748 KRPARPALVTPPLKQALAXARVLELPL 668
           ++P+RPA+ TPP+    A AR+   P+
Sbjct: 233 QKPSRPAISTPPVASKSAQARIGRPPV 259


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 59  DILTQNQQKGWWTIGLINSRYRYLTAETF--GFKINANGTSLKKK 187
           +IL++  Q+ +W    +   YRY+TA+ F  GFKI+  G +++ +
Sbjct: 429 EILSKKDQEQYWANPEL--PYRYVTAKKFEEGFKIHHFGRAMRSQ 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,542
Number of Sequences: 28952
Number of extensions: 253100
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)