Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30692.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 140 6e-34
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 136 1e-32
08_02_0657 - 19749835-19751942,19753123-19753561 108 4e-24
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 31 0.53
11_06_0144 - 20608382-20610277 28 4.9
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 140 bits (340), Expect = 6e-34
Identities = 65/114 (57%), Positives = 80/114 (70%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
PIDD+VEG+TGNLF+ +LKPYF+E YRP+ LVR GMR+VEFKV+ETDP+
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPA 178
Score = 83.8 bits (198), Expect = 9e-17
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +2
Query: 62 ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
+D K D S AIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRG TVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 136 bits (329), Expect = 1e-32
Identities = 63/114 (55%), Positives = 79/114 (69%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
PIDD+VEG+TGNLF+ +LKPYF+E YRP+ LVR GMR+VEFKV+ETDP+
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPT 178
Score = 87.8 bits (208), Expect = 6e-18
Identities = 43/65 (66%), Positives = 50/65 (76%)
Frame = +2
Query: 62 ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
AD K D S AIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRG TVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 108 bits (259), Expect = 4e-24
Identities = 46/103 (44%), Positives = 67/103 (65%)
Frame = +1
Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
C D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G
Sbjct: 79 CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138
Query: 436 NLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
+LFE YLKPYFM+ RP+ LVR M AVEFKV++T+P+
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPN 181
Score = 57.2 bits (132), Expect = 9e-09
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Frame = +2
Query: 83 DXSXAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGXTVLLKGKRRK 247
D S AIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRG V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 248 ETV 256
E V
Sbjct: 76 EAV 78
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 548 TTLNSTARMPXRTRRCRHGWIGR*X-SMKYGFKYTSNRLPVRPSTESSIGSMWTRFPYFT 372
+++ S +P + CR W+ + ++K G K+T+ V ++ G+ W R +
Sbjct: 55 SSIRSKGLLPRTGKSCRLRWVNKLRPNLKSGCKFTAEEERVVIELQAQFGNKWARIATYL 114
Query: 371 EG 366
+G
Sbjct: 115 QG 116
>11_06_0144 - 20608382-20610277
Length = 631
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 357 RSVSFSEIWKTSPHTAN**FS*GSYWQSIRSILEAVLHGGLPSDPSVTTPS 509
R++ F +W+ SPH + SY SI+ ++ A + S ++ PS
Sbjct: 10 RALKFDRVWRPSPHRSESDGGSCSYRNSIQRVVTASVAAASTSSTTLVFPS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,002
Number of Sequences: 37544
Number of extensions: 310663
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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