Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30692.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         94   9e-20
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               28   5.0  
SB_15202| Best HMM Match : Rho_N (HMM E-Value=2.3e-05)                 28   5.0  
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)                  28   5.0  
SB_28523| Best HMM Match : EGF (HMM E-Value=2e-05)                     27   8.7  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 43/59 (72%), Positives = 53/59 (89%)
 Frame = +2

Query: 80  DDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKRRKETV 256
           D+ + AIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRG TVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 508 LVRXGMRAVEFKVVETDPS 564
           LVR GMRAVEFKV+ETDPS
Sbjct: 107 LVRGGMRAVEFKVIETDPS 125



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 491 IRDDTFWSAGACAPSSSKWSKQIHQPFCIVAPDTVI 598
           +  D F   G       K  +    P+CIVAPDTVI
Sbjct: 101 LNGDMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVI 136


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 471  GGLPSDPSVTTPSGPXGHARRRVQSGRNRSINH 569
            G L  +P+ ++PSGP    RR V+   N  + H
Sbjct: 1073 GPLEENPAASSPSGPPAKQRRNVRFVANPDLAH 1105


>SB_15202| Best HMM Match : Rho_N (HMM E-Value=2.3e-05)
          Length = 416

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 480 PSDPSVTTPSGPXGHARRRVQSGRNRSINHFASWL 584
           PS P+  +   P  H   RV     R +N FA W+
Sbjct: 87  PSQPTRNSHVRPLKHFANRVVGSIKRELNEFADWI 121


>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
          Length = 1970

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 480 PSDPSVTTPSGPXGHARRRVQSGRNRSINHFASWL 584
           PS P+  +   P  H   RV     R +N FA W+
Sbjct: 218 PSQPTRNSHVRPLKHFANRVVGSIKRELNEFADWI 252


>SB_28523| Best HMM Match : EGF (HMM E-Value=2e-05)
          Length = 105

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -1

Query: 361 ERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGFLAAFALEQDCXTTEELKLLH 188
           ER + + K ++ GC       + +      ++  C+   +A ++E+DC T  E+K+++
Sbjct: 10  ERPLSNYK-SYSGCRVSQAPKQVNEPERLTIKETCDN--SAISIEEDCSTDAEMKVIY 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,782
Number of Sequences: 59808
Number of extensions: 356306
Number of successful extensions: 986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)