Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30692.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110913-1|AAI10914.1|  806|Homo sapiens valosin-containing prot...   155   9e-38
AL353795-2|CAH70993.1|  806|Homo sapiens valosin-containing prot...   155   9e-38
AF100752-1|AAD43016.1|  806|Homo sapiens transitional endoplasmi...   155   9e-38
AC004472-1|AAC07984.1|  806|Homo sapiens TERA_HUMAN protein.          155   9e-38
AF313485-1|AAG29873.1|  307|Homo sapiens valosin-containing prot...   155   1e-37
BC121794-1|AAI21795.1|  806|Homo sapiens valosin-containing prot...   153   6e-37

>BC110913-1|AAI10914.1|  806|Homo sapiens valosin-containing protein
           protein.
          Length = 806

 Score =  155 bits (377), Expect = 9e-38
 Identities = 74/114 (64%), Positives = 83/114 (72%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+L
Sbjct: 58  LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD+VEG+TGNLFEVYLKPYF+E YRPI      LVR GMRAVEFKVVETDPS
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS 171



 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 45/65 (69%), Positives = 58/65 (89%)
 Frame = +2

Query: 62  ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
           AD+K  DD S AIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRG TVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 242 RKETV 256
           R+E V
Sbjct: 64  RREAV 68


>AL353795-2|CAH70993.1|  806|Homo sapiens valosin-containing protein
           protein.
          Length = 806

 Score =  155 bits (377), Expect = 9e-38
 Identities = 74/114 (64%), Positives = 83/114 (72%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+L
Sbjct: 58  LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD+VEG+TGNLFEVYLKPYF+E YRPI      LVR GMRAVEFKVVETDPS
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS 171



 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 45/65 (69%), Positives = 58/65 (89%)
 Frame = +2

Query: 62  ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
           AD+K  DD S AIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRG TVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 242 RKETV 256
           R+E V
Sbjct: 64  RREAV 68


>AF100752-1|AAD43016.1|  806|Homo sapiens transitional endoplasmic
           reticulum ATPase protein.
          Length = 806

 Score =  155 bits (377), Expect = 9e-38
 Identities = 74/114 (64%), Positives = 83/114 (72%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+L
Sbjct: 58  LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD+VEG+TGNLFEVYLKPYF+E YRPI      LVR GMRAVEFKVVETDPS
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS 171



 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 45/65 (69%), Positives = 58/65 (89%)
 Frame = +2

Query: 62  ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
           AD+K  DD S AIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRG TVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 242 RKETV 256
           R+E V
Sbjct: 64  RREAV 68


>AC004472-1|AAC07984.1|  806|Homo sapiens TERA_HUMAN protein.
          Length = 806

 Score =  155 bits (377), Expect = 9e-38
 Identities = 74/114 (64%), Positives = 83/114 (72%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+L
Sbjct: 58  LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD+VEG+TGNLFEVYLKPYF+E YRPI      LVR GMRAVEFKVVETDPS
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS 171



 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 45/65 (69%), Positives = 58/65 (89%)
 Frame = +2

Query: 62  ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
           AD+K  DD S AIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRG TVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 242 RKETV 256
           R+E V
Sbjct: 64  RREAV 68


>AF313485-1|AAG29873.1|  307|Homo sapiens valosin-containing protein
           protein.
          Length = 307

 Score =  155 bits (375), Expect = 1e-37
 Identities = 72/103 (69%), Positives = 78/103 (75%)
 Frame = +1

Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
           CIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+VEG+TG
Sbjct: 7   CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 66

Query: 436 NLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           NLFEVYLKPYF+E YRPI      LVR GMRAVEFKVVETDPS
Sbjct: 67  NLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS 109


>BC121794-1|AAI21795.1|  806|Homo sapiens valosin-containing protein
           protein.
          Length = 806

 Score =  153 bits (370), Expect = 6e-37
 Identities = 73/114 (64%), Positives = 82/114 (71%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+L
Sbjct: 58  LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD+VEG+TGNLFEVYLKPYF+E YRPI      LVR GMRAVEFKVVET PS
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPS 171



 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 45/65 (69%), Positives = 58/65 (89%)
 Frame = +2

Query: 62  ADNKSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKR 241
           AD+K  DD S AIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRG TVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 242 RKETV 256
           R+E V
Sbjct: 64  RREAV 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,018,897
Number of Sequences: 237096
Number of extensions: 1660175
Number of successful extensions: 3823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3820
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)