Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30692.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   132   2e-31
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   121   4e-28
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   121   4e-28
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   3.3  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  132 bits (318), Expect = 2e-31
 Identities = 57/114 (50%), Positives = 81/114 (71%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  + +  I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD++EGLTGNLF+V+LKPYF+E YRP+H      V+  MR VEFKVVET+P+
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPA 177



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 39/63 (61%), Positives = 52/63 (82%)
 Frame = +2

Query: 71  KSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKRRKE 250
           K  D+ S AIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRG  V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 251 TVA 259
           +VA
Sbjct: 73  SVA 75


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  121 bits (291), Expect = 4e-28
 Identities = 57/114 (50%), Positives = 78/114 (68%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD++EGLTGNLF+V+L+PYF + YRP+H      V+  MR VEFKVVETDP+
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPA 176



 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 37/63 (58%), Positives = 53/63 (84%)
 Frame = +2

Query: 71  KSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKRRKE 250
           K  D+ + AIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRG +V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  121 bits (291), Expect = 4e-28
 Identities = 57/114 (50%), Positives = 78/114 (68%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEXYRPIHP*RHLLVRXGMRAVEFKVVETDPS 564
           PIDD++EGLTGNLF+V+L+PYF + YRP+H      V+  MR VEFKVVETDP+
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPA 176



 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 37/63 (58%), Positives = 53/63 (84%)
 Frame = +2

Query: 71  KSPDDXSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGXTVLLKGKRRKE 250
           K  D+ + AIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRG +V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,811
Number of Sequences: 27780
Number of extensions: 264896
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)