Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30689.Seq
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 140 2e-33
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 140 2e-33
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 140 2e-33
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 140 2e-33
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 133 2e-31
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 79 1e-14
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 35 0.14
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 35 0.14
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 140 bits (339), Expect = 2e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 103 bits (247), Expect = 3e-22
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +3
Query: 255 AISKALIAFYQXYVXEASKXXIKDILVQYDRSLLVADPRRXEPKKFGGPGARAXYQKSYR 434
+ISKAL+A+YQ YV EASK IKDIL+QYDR+LLVADPRR E KKFGGPGARA YQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (339), Expect = 2e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 103 bits (247), Expect = 3e-22
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +3
Query: 255 AISKALIAFYQXYVXEASKXXIKDILVQYDRSLLVADPRRXEPKKFGGPGARAXYQKSYR 434
+ISKAL+A+YQ YV EASK IKDIL+QYDR+LLVADPRR E KKFGGPGARA YQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (339), Expect = 2e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 103 bits (247), Expect = 3e-22
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +3
Query: 255 AISKALIAFYQXYVXEASKXXIKDILVQYDRSLLVADPRRXEPKKFGGPGARAXYQKSYR 434
+ISKAL+A+YQ YV EASK IKDIL+QYDR+LLVADPRR E KKFGGPGARA YQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (339), Expect = 2e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 103 bits (247), Expect = 3e-22
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +3
Query: 255 AISKALIAFYQXYVXEASKXXIKDILVQYDRSLLVADPRRXEPKKFGGPGARAXYQKSYR 434
+ISKAL+A+YQ YV EASK IKDIL+QYDR+LLVADPRR E KKFGGPGARA YQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 133 bits (322), Expect(2) = 2e-31
Identities = 59/81 (72%), Positives = 73/81 (90%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+Y Q
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQ 86
Score = 21.8 bits (44), Expect(2) = 2e-31
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 277 PSTRXM*XKPQXXXSKTS*YNTIGVCW 357
P TR M + SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 78.6 bits (185), Expect = 1e-14
Identities = 38/84 (45%), Positives = 54/84 (64%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 196 XIRVTVKGGGHVAQVYAIRQLFQR 267
I V VKG GHV Q+YA+ Q +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISK 101
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTV 213
G++KTA A A K G G ++VNG L P + Q + Q ++ + TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 214 KGGGHVAQVYAIR 252
GGG AQ AIR
Sbjct: 333 SGGGRSAQAGAIR 345
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTV 213
G++KTA A A K G G ++VNG L P + Q + Q ++ + TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 214 KGGGHVAQVYAIR 252
GGG AQ AIR
Sbjct: 239 SGGGRSAQAGAIR 251
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,655,387
Number of Sequences: 237096
Number of extensions: 1360887
Number of successful extensions: 3100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3100
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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