Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30688.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 57 1e-08
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 33 0.20
10_08_0050 + 14469879-14470072,14470620-14471094 30 1.8
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 30 1.8
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 30 1.8
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 29 3.2
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 29 3.2
01_06_0049 - 25953811-25954131,25954223-25954903 29 3.2
10_02_0175 - 6207485-6207898 29 4.2
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 29 4.2
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 29 4.2
04_04_1220 + 31843628-31844755 29 4.2
03_04_0069 - 17022468-17023361 29 4.2
01_06_0681 - 31150651-31151148,31151427-31151483 29 4.2
06_03_0518 - 21685950-21686221,21686768-21686882 28 5.6
05_05_0227 - 23449579-23450459,23450574-23450691 28 5.6
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 28 5.6
02_05_0921 + 32739495-32739696,32739815-32740002,32740132-327403... 28 5.6
12_02_0625 - 21331209-21331273,21331364-21331555,21332348-213325... 28 7.4
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 7.4
04_03_1017 + 21747044-21748051 28 7.4
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 27 9.7
08_02_0844 + 21798076-21798618 27 9.7
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 27 9.7
06_02_0321 - 14355058-14355681 27 9.7
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794... 27 9.7
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = -2
Query: 506 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 387
N++LMQ+QADLLG PV+RP +E+TALGAA AG A+ VW
Sbjct: 442 NNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVW 481
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 511 PSLRRRGVASGARSLQPSRPPRRASGD 591
PS RRRG G R P P RR SGD
Sbjct: 28 PSTRRRGAGGGPRRAVPQPPVRRPSGD 54
>10_08_0050 + 14469879-14470072,14470620-14471094
Length = 222
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 278 GWTDTKNEMSTQKNQIELLQFCRRD 204
G+T T ++ S N E+L+FCRR+
Sbjct: 101 GFTSTSSDRSNSGNSSEMLRFCRRE 125
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/77 (28%), Positives = 29/77 (37%)
Frame = +1
Query: 343 AGRNVSAGGLGIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICIRTEFSPSLR 522
AGR + G TR A A R + P++ R S ++R
Sbjct: 225 AGRAMGGPRTGGSASDTRTTSTPRSAPRCASARAASRRSSAAPARRRASEPRPRVSSAMR 284
Query: 523 RRGVASGARSLQPSRPP 573
RG+A GAR RPP
Sbjct: 285 VRGLARGARGCSRRRPP 301
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 508 SPSLRRRGVASGARSLQPSRPPRRASGDTRPP 603
S S GA + QP RPP+ G TRPP
Sbjct: 23 STSTSTAAAEGGAVASQPPRPPQPRPGTTRPP 54
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 358 SAGGLGIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACIC---IRTEFSPSLRRR 528
+A ++ + +R A ++A RA S +PS S C +R + +LR R
Sbjct: 3 AAASSSLLAAASSSSRAAAVSARRAP-SASPAAAASLPSPSRASCAPPLRASAARTLRSR 61
Query: 529 GVASGARSLQPSRPPRRAS 585
VAS A ++QP P R S
Sbjct: 62 VVASAAPAMQPP-PASRVS 79
>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 350 GMYRPVGWVLSWATHALRDLRQWPPPGL 433
G PVGW L + T L D PPP L
Sbjct: 926 GNNNPVGWPLRFLTPVLSDENSVPPPSL 953
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 487 ICIRTEFSPSLRRRGVASGARSLQPSRPPRRASGDTRPP 603
I +R+ L ++ A+ A S P+R PR +S T PP
Sbjct: 187 ISVRSTSYLKLNQQSQAATATSAAPNRKPRTSSNPTNPP 225
>10_02_0175 - 6207485-6207898
Length = 137
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 606 RWRPCVTRRAPWRTRWLQTARP*GNSSP 523
RWR RR WR RW Q R G P
Sbjct: 52 RWRAAAARRGEWR-RWRQRRRGGGRRRP 78
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = -1
Query: 585 RRAPWRTRWLQTARP*GNSSPTEGWRELSSDADAG*FTGYTSHSSPHDGKYSPGGGHC 412
R PW ++P + P S+ AD TG + S H PGG HC
Sbjct: 10 RGRPWHVLPSSPSQPPSSPPPRASADRSSAAADLDLGTGRSGEHSVHRVFLDPGGKHC 67
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 611 GRAGGRVSPDARRGGRDGCRLRAP---EATPRRRRDGENSVLMQMQADLLGIP 462
GR GGR P +RGG + RLR P A R RR N V + +LL IP
Sbjct: 42 GRRGGR-RPRGQRGGGEERRLRRPASQRAASRIRR--HNGVNLVHGGNLLQIP 91
>04_04_1220 + 31843628-31844755
Length = 375
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 426 GGGHCRRSRNACVAHDNTQPT 364
GGGH R R +CV D+ +P+
Sbjct: 231 GGGHMRERRTSCVVVDDMEPS 251
>03_04_0069 - 17022468-17023361
Length = 297
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 614 QGRAGGRVSPDARRGGRDGCRLR---APEATPRRR 519
+GRAG R + R GGR R+R AP PRRR
Sbjct: 254 RGRAGARGARVRRVGGRAARRVRHLGAPPCAPRRR 288
>01_06_0681 - 31150651-31151148,31151427-31151483
Length = 184
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 638 KDSTSAYCQGRAGGRVSPDARRGGRDGCRL 549
+D C+GR+G SP A GG G R+
Sbjct: 144 RDIVRISCRGRSGDSASPSAAPGGGAGARI 173
>06_03_0518 - 21685950-21686221,21686768-21686882
Length = 128
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Frame = +1
Query: 343 AGRNVSAGGLGIVV----GHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICIRTEFS 510
AGR V A G G G RP + + R R G+P I S
Sbjct: 3 AGRRVLAAGAGCACLRASGRPGAVRPRRRELGLGKVDLARRRRQGLPLIITIAFIEMGSS 62
Query: 511 PSLRRRGVASGARSLQPSRP-PRRASGDTRPPAR 609
P++ V + +++ P P G PP R
Sbjct: 63 PTIATATVPTPTTAIRAKSPTPEEMGGRRGPPKR 96
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 632 STSAYCQGRAGG-RVSPDARRGGRDGCR 552
++S+ C+G GG R S ARR G D CR
Sbjct: 225 ASSSSCRGDGGGGRPSAPARREGTDPCR 252
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = -2
Query: 566 RDGCRLRAPEATPRRRRDGENSVLMQMQADLLGIPVI----RPLMMESTALGAAIVAGRA 399
+ CR R RRRR + + + A G+PV+ P + +++ GA + A
Sbjct: 165 KKSCRRRLAGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSLLSSA 224
Query: 398 MRVWPTTIPSP 366
P +P+P
Sbjct: 225 RATGPWLMPTP 235
>02_05_0921 +
32739495-32739696,32739815-32740002,32740132-32740330,
32740426-32740604,32740760-32740910,32741165-32741298,
32741436-32741615
Length = 410
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/46 (45%), Positives = 24/46 (52%)
Frame = +1
Query: 511 PSLRRRGVASGARSLQPSRPPRRASGDTRPPARP*QYADVESFRSK 648
PSLRRR A RS SR P + G P RP ADV+ R+K
Sbjct: 21 PSLRRRDSARSLRSTFLSRLPDKVRGG-GDPERP--AADVDLTRAK 63
>12_02_0625 -
21331209-21331273,21331364-21331555,21332348-21332558,
21333600-21333700,21333839-21333844,21333956-21334051,
21334485-21334497
Length = 227
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 488 MQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPAD 357
+QADLLG PVIRP + AG ++ PP D
Sbjct: 41 LQADLLGSPVIRPSEPLELQKQLELAAGIWIKAVDPAFGLPPVD 84
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = +1
Query: 469 PSKSACICIRTEFSPSLRRRG----------VASGARSLQPSRPPRRASGDTRPP 603
P ++A +R SP RRRG AS A S S P RR GD +PP
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPARRRGGDQQPP 154
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 502 EFSPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 612
++SPS R AS S PS PPRRA+ P+ P
Sbjct: 192 DYSPSTPPRRAASPDYS--PSTPPRRAASPDYSPSTP 226
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 573 WRTRWLQTARP*GNSSPTEGWRELSSDADAG*FTGYTSHSSP 448
W + +P NS P E R+L S + +GY S SSP
Sbjct: 824 WTSHTSVDIKPADNSVPGEDQRQLPSTPGSTTSSGYPSRSSP 865
>08_02_0844 + 21798076-21798618
Length = 180
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -2
Query: 626 SAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDGENSVLMQMQADLLGIPVIRPL 447
S Y +G AGGR D DG + A E P E +L+ M D+ + P+
Sbjct: 67 SGYLEGGAGGRGGNDDGGAPADGAKPAASELPP---PIWEEKILVIMAGDVKPTYLATPM 123
Query: 446 MMESTALG 423
+++ G
Sbjct: 124 SSRASSFG 131
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 508 SPSLRRRGVASGARSLQPSRPPRRASGDTRPP 603
S +LRRRG +G+ + P+ P A+ D PP
Sbjct: 64 SVALRRRGPPAGSAAGTPAPPRAAAAFDVAPP 95
>06_02_0321 - 14355058-14355681
Length = 207
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 647 FERKDSTSAYCQGRAGGR--VSPDARRGGRDGCRLRAPEATPRR 522
F + + +CQ R+GG+ VSPD G++G R EAT RR
Sbjct: 77 FRAMEESPLFCQRRSGGKVFVSPDYNE-GKEGQR----EATMRR 115
>01_06_0854 -
32477994-32478161,32478689-32478826,32479225-32479440,
32479580-32479656,32481144-32481555,32482248-32482850,
32482954-32483229
Length = 629
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 495 DADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHDNTQPTG 361
DAD G T HS P G+ G G RR R T P G
Sbjct: 387 DADGGGGADSTGHSPPRSGR-KRGAGQQRRQRRRSPRPRVTAPDG 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,396
Number of Sequences: 37544
Number of extensions: 443786
Number of successful extensions: 1643
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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