Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30688.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 51 7e-07
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 51 7e-07
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7) 28 7.5
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 28 7.5
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_25866| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Frame = -2
Query: 506 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 387
N +LMQ+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 21 NRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Frame = -2
Query: 506 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 387
N +LMQ+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 21 NRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Frame = -2
Query: 506 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 387
N +LMQ+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 432 NRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 646 LSERTRRQHIVRAALEAVCHQTR-XXXXXXXXXXAPLRQLLADGGM 512
L++ T R HI RA LEAVC QTR PL LL DGGM
Sbjct: 384 LTQFTNRAHIARATLEAVCFQTRELLDAMNEDCGIPLASLLVDGGM 429
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 521 RRDG---ENSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 387
R DG N +M++ + L G + RP + + LGAA +AG A VW
Sbjct: 9 RTDGGVCNNDFVMELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -2
Query: 620 YCQGRAGGRVSPDARRGGRDGCRLRAPEATPRR 522
Y GR GGR RGGR G R A EA+P R
Sbjct: 418 YRGGRGGGRGG--GGRGGRGGLRGEASEASPNR 448
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 629 TSAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDGENSVL 495
T A+ R GGR+ A R GR+G R+++ A P R G L
Sbjct: 1299 TLAHPSSRKGGRMKSLANRSGRNGGRMKS-LAHPSSRNGGRMKTL 1342
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 629 TSAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDG 510
T A+ R GGR+ A R R+G R+++ A P RR+ G
Sbjct: 1705 TLAHPSSRKGGRMKSLAHRSSRNGGRMKS-LAHPSRRKGG 1743
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 629 TSAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDG 510
T A+ R GGR+ A R GR+G R++ A P R+ G
Sbjct: 1271 TLAHPSSRKGGRMKSLAHRSGRNGGRMKT-LAHPSSRKGG 1309
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 623 AYCQGRAGGRVSPDARRGGRDGCRLRA 543
A+ GR GGR+ A R GR+G R+++
Sbjct: 1777 AHRSGRNGGRMKSLANRSGRNGGRMKS 1803
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 348 QECIGRW--AGYCRGPHTHCATC 410
QEC+GRW A + RG H C C
Sbjct: 26 QECLGRWNVAQFFRGRHPTCPHC 48
>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 529 GVASGARSLQPSRPPRRASGDTRPPARP*QYADVESFRS 645
G G+ S P+RPP R + ++ P RP Y + R+
Sbjct: 3 GSFRGSGSFPPNRPPDRNTFNSNPQFRPHYYQEASEERN 41
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 487 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 308
CR + +Q VP+ + Q WG + + +C +Q R H +LL + +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 370 LGIVVGHTRIARPATMAAPRAVLSIMRGRMTGI 468
+G+ + HTR+A + A VLSI R R+ G+
Sbjct: 1618 VGLSIHHTRLADVSIHHARLGVLSIHRSRLVGL 1650
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 336 GKSRQECIGRWAGYCRGPHTHCAT 407
G + Q C G AGYC P HC T
Sbjct: 751 GSAAQHC-GTNAGYCGIPSNHCGT 773
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 372 GYCRGPHTHCATCDNGRPQGCTFHHEG 452
G C+ C TC P+ CTF +G
Sbjct: 470 GICKSCDPGCTTCSTSDPKKCTFCAKG 496
>SB_25866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 536 ATPRRRRDGENSVLMQMQADLLGIPVI-RP 450
A PR + DGE L+Q AD G P + RP
Sbjct: 27 AEPRVKDDGEKEALIQEGADPFGFPTLTRP 56
>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 470 PVNQPASASELSSRHPSVGEELPQGRAVCSHRVR 571
P+NQ +A +L S PS+ + P + +H+ R
Sbjct: 509 PINQGPTAQQLGSDRPSIKGQPPNNQGPTAHQSR 542
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 508 SPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 609
+P RRR S P R PRR S PP R
Sbjct: 1078 TPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRR 1111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,670,017
Number of Sequences: 59808
Number of extensions: 470707
Number of successful extensions: 1203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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