Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30688.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    29   3.8  
AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical...    29   3.8  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z83114-2|CAB05552.1|  114|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = -2

Query: 611 GRAGGRVSPDARRGGRDGCRLRAP--EATPRR---RRDGENS 501
           G  GG  SP ARRGG  G R R+P    +PRR   RRD   S
Sbjct: 193 GGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRS 234



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = +1

Query: 421 APRAVLSIMRGRMTGIPSKSACICIRTEFSPSLRRRGVASGARSLQPSRPPRRASGDTRP 600
           +P A  S    R    PSKS     + E  P+ RRR   S + S  P  P R  S    P
Sbjct: 378 SPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRR---SPSASKSPPAPKRAKSRSKSP 434

Query: 601 PA 606
           PA
Sbjct: 435 PA 436



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 520 RRRGVASGARSLQPSRPPRRASGDTRPPA 606
           RRR  +S +RS  P  PPRR   D+   A
Sbjct: 502 RRRSPSSSSRSRSPPPPPRRPRQDSEQQA 530


>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 506 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAG 405
           N +  ++QAD++G  ++ P + E +  GAA+  G
Sbjct: 420 NKLFNEIQADIMGRDIVTPKITEISGWGAAVAGG 453


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 386 ATHALRDLRQWPPPGLYFPS*GDE*LVYPVNQPASASELSSRHPSVGEELPQGRAVCSHR 565
           A H L + ++ PPPG  FP          ++ P S    SSR PS   E  + R+    R
Sbjct: 11  AIHRLNEEKKQPPPG--FPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRS--RSR 66

Query: 566 VRHGAR 583
            R G R
Sbjct: 67  DRRGGR 72


>AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical
           protein T08B2.5d protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 386 ATHALRDLRQWPPPGLYFPS*GDE*LVYPVNQPASASELSSRHPSVGEELPQGRAVCSHR 565
           A H L + ++ PPPG  FP          ++ P S    SSR PS   E  + R+    R
Sbjct: 69  AIHRLNEEKKQPPPG--FPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRS--RSR 124

Query: 566 VRHGAR 583
            R G R
Sbjct: 125 DRRGGR 130


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 386 ATHALRDLRQWPPPGLYFPS*GDE*LVYPVNQPASASELSSRHPSVGEELPQGRAVCSHR 565
           A H L + ++ PPPG  FP          ++ P S    SSR PS   E  + R+    R
Sbjct: 69  AIHRLNEEKKQPPPG--FPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRS--RSR 124

Query: 566 VRHGAR 583
            R G R
Sbjct: 125 DRRGGR 130


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 386 ATHALRDLRQWPPPGLYFPS*GDE*LVYPVNQPASASELSSRHPSVGEELPQGRAVCSHR 565
           A H L + ++ PPPG  FP          ++ P S    SSR PS   E  + R+    R
Sbjct: 70  AIHRLNEEKKQPPPG--FPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRS--RSR 125

Query: 566 VRHGAR 583
            R G R
Sbjct: 126 DRRGGR 131


>Z83114-2|CAB05552.1|  114|Caenorhabditis elegans Hypothetical
           protein K09B11.3 protein.
          Length = 114

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 647 FERKDSTSAYCQGRA-GGRVSPDARRGGRDGCRLRAPEATPRRRRDGENSVLMQ 489
           +ER      + +G   GG+   +A+  G DGC       T  +RR   N  +++
Sbjct: 47  YERLKFEEVWARGAGRGGKAGAEAKSFGGDGCCKSGEARTQSKRRHARNGQVVK 100


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 246 R*HFIFSIGPSHAFIQGFFPTNSPHFSFFIGKSRQECIGRWA 371
           R HF F  GP        F T  PH+   +  + ++ +GRWA
Sbjct: 40  RPHFTFYDGPP-------FATGLPHYGHMLTSTIKDVVGRWA 74


>U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical
           protein F53A9.5 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 442 WKVQPWGRPLSQVAQC 395
           W+  PW  P+S +AQC
Sbjct: 121 WRSTPWTLPISNIAQC 136


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 520 RRRGVASGARSLQPSRPPRRASGDTRPPARP 612
           R  G  +G+ S   S  P RASG   PPA P
Sbjct: 118 RLSGSTTGSSSSTSSSAPPRASGAAPPPAGP 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,972,843
Number of Sequences: 27780
Number of extensions: 340592
Number of successful extensions: 939
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)