Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30688.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl... 55 5e-08
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib... 37 0.013
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib... 37 0.013
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 33 0.12
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 33 0.12
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 30 1.5
At4g24900.1 68417.m03564 expressed protein 29 3.5
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 29 3.5
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At3g50610.1 68416.m05534 hypothetical protein 28 4.7
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 28 4.7
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 4.7
At5g24480.1 68418.m02885 hypothetical protein similar to unknown... 28 6.1
At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5... 27 8.1
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 27 8.1
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden... 27 8.1
>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
glycerol kinase (ATP:glycerol 3-phosphotransferase,
Glycerokinase, GK)[Mycobacterium tuberculosis]
Swiss-Prot:O69664
Length = 522
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = -2
Query: 506 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 387
N++LMQ+QADL+G PV+RP+ +E+TALGAA AG A+ W
Sbjct: 434 NNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFW 473
>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 451
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -2
Query: 509 ENSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPT 381
+N + +Q AD++G P+I P ES LGAAI+ A + +P+
Sbjct: 356 KNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 398
>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 579
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -2
Query: 509 ENSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPT 381
+N + +Q AD++G P+I P ES LGAAI+ A + +P+
Sbjct: 484 KNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 526
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 550 SLQPSRPPRRASGDTRPPARP 612
S PSRPP+R+ G RPP RP
Sbjct: 147 SPSPSRPPKRSRGPPRPPTRP 167
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 550 SLQPSRPPRRASGDTRPPARP 612
S PSRPP+R+ G RPP RP
Sbjct: 147 SPSPSRPPKRSRGPPRPPTRP 167
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 383 WATHALRDLRQWPPPGLYFPS*GDE*LVYPVNQPASASELSSRHPSV-GEELPQGRAVCS 559
+ TH +D Q PG+ + + V P QP ++ + S G LPQ S
Sbjct: 181 YPTHGYQDFHQQAVPGVSYQQ-HQQFPVPPTTQPERYPNYATGNESFPGVGLPQENLPTS 239
Query: 560 HRVRHGARLVTHGL 601
+ RLVTH L
Sbjct: 240 SAIHQQERLVTHKL 253
>At4g24900.1 68417.m03564 expressed protein
Length = 421
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 471 GYTSHSSPHDGK-YSPGGGHCRRSRNACVAHDNTQPTGRYIPAG 343
G+ HS P K YS G +C + N V+ D Q G Y P G
Sbjct: 230 GFGEHSIPCRSKDYSGNGNYCTQE-NYQVSQDKKQIDGSYNPPG 272
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/89 (26%), Positives = 34/89 (38%)
Frame = +2
Query: 362 PVGWVLSWATHALRDLRQWPPPGLYFPS*GDE*LVYPVNQPASASELSSRHPSVGEELPQ 541
P G + T + DL+ PPP L+ G P++ H + G + P
Sbjct: 798 PPGVIFPKKTVDIGDLK--PPPALWHEDNGRR----PMHNNHGMHNNHGMHNNQGRQNPP 851
Query: 542 GRAVCSHRVRHGARLVTHGLQRGPDNMLT 628
G H RLV++ LQ G D T
Sbjct: 852 GSVSGRHLGNAAHRLVSNSLQMGTDRYQT 880
>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana]
gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 368
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 483 G*FTGYTSH-SSPHDGKYSPGGGHCRRSRNACVAHDNTQPTGRYIPAGSY 337
G FT Y H + DG +P GG RR NA VA T P Y
Sbjct: 60 GFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVY 109
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 525 PTEGWRELSSDADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHDN 376
PTEG + L ++ TG T +P +SPG GH + + N + D+
Sbjct: 61 PTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKKGNVNVESSEDD 110
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 471 GYTSHSSPHDGKYSPGGGHCRRSRNACVAHDNTQPTGRYIPAGSYQ 334
GY S+ D Y GHC+ H QPT +P Q
Sbjct: 127 GYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQ 172
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 508 SPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 609
+PS RRR + AR + PP R PPAR
Sbjct: 305 APSRRRRSPSPPARRRRSPSPPARRRRSPSPPAR 338
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 508 SPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 609
SPS+ +R + PS PPRRA + PPA+
Sbjct: 444 SPSIEQRLPSPPVAQRLPSPPPRRAGLPSPPPAQ 477
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 496 RTEFSPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 609
R+ P+ RRR + AR + PP R PPAR
Sbjct: 311 RSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPAR 348
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 436 LSIMRGRMTGIPS---KSACICIRTEFSPSLRRRGVASGARSLQPSRPPRRASGDTRPPA 606
+S +RGR PS + A +R + RR S + S P R RR+ +R P+
Sbjct: 559 MSPVRGRGKSSPSSRHQKARSPVRRRSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPS 618
Query: 607 R 609
R
Sbjct: 619 R 619
>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
protein (gb|AAD32930.1)
Length = 350
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -2
Query: 455 RPLMMESTALGAAIVAGRAMRVWPTTIPSP---PADTFL 348
RP ++ + R R WP T+PSP A TFL
Sbjct: 10 RPHFQSIHFFDCSLTSDRGQRSWPATLPSPQPLSASTFL 48
>At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5) /
salicylic acid induction deficient 1 (SID1) identical to
SP|Q945F0; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 543
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 427 WGRPLSQVAQCVCGPRQYPAHRPIHSCRLL 338
WG PLSQ AQ Y A+R + R L
Sbjct: 371 WGEPLSQTAQSFMPEMLYGANRNLPKARTL 400
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1
Query: 391 TRIARPATMAAPRAVLS---IMRGRMTGIPSKSAC-ICIRTEFSPSLRRRGVASGARSLQ 558
T+I A++++P+ +S R T P+ + I T +PS + G A +RSL
Sbjct: 140 TQIQASASVSSPKRTVSRSLTPSSRKTPSPTSTPSRISTTTSTTPSFKTAGDAQRSRSLT 199
Query: 559 PSRPPRRAS 585
P P+ A+
Sbjct: 200 PRAKPQIAA 208
>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
[Arabidopsis thaliana]; contains Pfam profiles PF01966:
HD domain, PF04607: Region found in RelA / SpoT proteins
Length = 712
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 440 PS*GDE*LVYPVNQPASASELSSRHPSVGEEL 535
P+ G L++ S+S SS HPSVGEEL
Sbjct: 48 PTIGGLSLLFSGASVKSSSSSSSSHPSVGEEL 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,370
Number of Sequences: 28952
Number of extensions: 313198
Number of successful extensions: 837
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -