Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30687.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51911| Best HMM Match : NTP_transferase (HMM E-Value=1.4e-11)       49   3e-06
SB_41505| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_35699| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_37844| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               28   8.4  

>SB_51911| Best HMM Match : NTP_transferase (HMM E-Value=1.4e-11)
          Length = 280

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/24 (87%), Positives = 24/24 (100%)
 Frame = +2

Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
           ++ALILVGGYGTRLRPLTLS+PKP
Sbjct: 1   MKALILVGGYGTRLRPLTLSKPKP 24



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +1

Query: 376 EQVSKLGVSLTFSHETEPLGTAGPLALARELLSTSSEP 489
           E + +LG+ +T S E EPLGTAGPLALA + L+ ++EP
Sbjct: 39  EALVQLGIKITISQEKEPLGTAGPLALAHDYLTVNNEP 76



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%), Gaps = 2/32 (6%)
 Frame = +3

Query: 510 VICEFPFKELARYHKNHGKEGTIVV--TKVEE 599
           VIC+FPF+E+  +HK HGKEGTIV+  T +E+
Sbjct: 84  VICDFPFREMVEFHKKHGKEGTIVMRPTSIEK 115


>SB_41505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +1

Query: 391 LGVSLTFSHETEPLGTAGPLALARELLSTSSEP 489
           LG+ +T S E EPLGTAGPLALA + L+ ++EP
Sbjct: 1   LGIKITISQEKEPLGTAGPLALAHDYLTVNNEP 33



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 510 VICEFPFKELARYHKNHGKEGTIV 581
           VIC+FPF+E+  +HK HGKEGTIV
Sbjct: 41  VICDFPFREMVEFHKKHGKEGTIV 64


>SB_35699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 185 RALILVGG--YGTRLRPLTLSRPKP 253
           + +IL+GG   GTR RPL+L  PKP
Sbjct: 3   KVVILIGGPMKGTRFRPLSLELPKP 27


>SB_37844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 611 IFGWLFYFCNHYCTFLPMI 555
           +  WLF  CNH C  LP+I
Sbjct: 256 VMEWLFRSCNHPCKTLPLI 274


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 392 SFETCSVNSFS---ISSARYDTANMTCVTPASTK 300
           S E CSVN +      S  YDT   TC T  ST+
Sbjct: 54  SLEQCSVNCYLSEVCQSVNYDTTLKTCQTSISTR 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,052,143
Number of Sequences: 59808
Number of extensions: 384776
Number of successful extensions: 850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)