Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30687.Seq
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008033-1|AAH08033.1| 360|Homo sapiens GDP-mannose pyrophospho... 106 9e-23
BC001141-1|AAH01141.1| 360|Homo sapiens GDP-mannose pyrophospho... 106 9e-23
AK024319-1|BAB14882.1| 387|Homo sapiens protein ( Homo sapiens ... 106 9e-23
AF135421-1|AAD38516.1| 360|Homo sapiens GDP-mannose pyrophospho... 106 9e-23
BC007456-1|AAH07456.1| 420|Homo sapiens GDP-mannose pyrophospho... 31 5.2
AK222951-1|BAD96671.1| 420|Homo sapiens GDP-mannose pyrophospho... 31 5.2
AK000999-1|BAA91460.1| 420|Homo sapiens protein ( Homo sapiens ... 31 5.2
AF135422-1|AAD38517.1| 399|Homo sapiens GDP-mannose pyrophospho... 31 5.2
AC053503-4|AAY15053.1| 420|Homo sapiens unknown protein. 31 5.2
>BC008033-1|AAH08033.1| 360|Homo sapiens GDP-mannose
pyrophosphorylase B protein.
Length = 360
Score = 106 bits (254), Expect = 9e-23
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+F NKPIL+HQ+EAL AGV VILAVSY ++ +EKE+ Q +LG+ ++ SHE EPLG
Sbjct: 26 VDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLG 85
Query: 436 TAGPLALARELLSTSSEP 489
TAGPLALAR+LLS +++P
Sbjct: 86 TAGPLALARDLLSETADP 103
Score = 96.7 bits (230), Expect = 7e-20
Identities = 41/64 (64%), Positives = 56/64 (87%), Gaps = 1/64 (1%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYD-DNGQIESFIEKPQEFISNQ 686
VIC+FPF+ + ++H++HG+EG+I+VTKVEEPSKYGVVV + D G+I F+EKPQ F+SN+
Sbjct: 111 VICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNK 170
Query: 687 INAG 698
INAG
Sbjct: 171 INAG 174
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGGYGTRLRPLTLS PKP
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKP 24
>BC001141-1|AAH01141.1| 360|Homo sapiens GDP-mannose
pyrophosphorylase B protein.
Length = 360
Score = 106 bits (254), Expect = 9e-23
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+F NKPIL+HQ+EAL AGV VILAVSY ++ +EKE+ Q +LG+ ++ SHE EPLG
Sbjct: 26 VDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLG 85
Query: 436 TAGPLALARELLSTSSEP 489
TAGPLALAR+LLS +++P
Sbjct: 86 TAGPLALARDLLSETADP 103
Score = 96.7 bits (230), Expect = 7e-20
Identities = 41/64 (64%), Positives = 56/64 (87%), Gaps = 1/64 (1%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYD-DNGQIESFIEKPQEFISNQ 686
VIC+FPF+ + ++H++HG+EG+I+VTKVEEPSKYGVVV + D G+I F+EKPQ F+SN+
Sbjct: 111 VICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNK 170
Query: 687 INAG 698
INAG
Sbjct: 171 INAG 174
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGGYGTRLRPLTLS PKP
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKP 24
>AK024319-1|BAB14882.1| 387|Homo sapiens protein ( Homo sapiens
cDNA FLJ14257 fis, clone PLACE1000547, highly similar to
Homo sapiens GDP-mannose pyrophosphorylase B (GMPPB)
mRNA. ).
Length = 387
Score = 106 bits (254), Expect = 9e-23
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+F NKPIL+HQ+EAL AGV VILAVSY ++ +EKE+ Q +LG+ ++ SHE EPLG
Sbjct: 26 VDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLG 85
Query: 436 TAGPLALARELLSTSSEP 489
TAGPLALAR+LLS +++P
Sbjct: 86 TAGPLALARDLLSETADP 103
Score = 96.7 bits (230), Expect = 7e-20
Identities = 41/64 (64%), Positives = 56/64 (87%), Gaps = 1/64 (1%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYD-DNGQIESFIEKPQEFISNQ 686
VIC+FPF+ + ++H++HG+EG+I+VTKVEEPSKYGVVV + D G+I F+EKPQ F+SN+
Sbjct: 111 VICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNK 170
Query: 687 INAG 698
INAG
Sbjct: 171 INAG 174
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGGYGTRLRPLTLS PKP
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKP 24
>AF135421-1|AAD38516.1| 360|Homo sapiens GDP-mannose
pyrophosphorylase B protein.
Length = 360
Score = 106 bits (254), Expect = 9e-23
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+F NKPIL+HQ+EAL AGV VILAVSY ++ +EKE+ Q +LG+ ++ SHE EPLG
Sbjct: 26 VDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLG 85
Query: 436 TAGPLALARELLSTSSEP 489
TAGPLALAR+LLS +++P
Sbjct: 86 TAGPLALARDLLSETADP 103
Score = 96.7 bits (230), Expect = 7e-20
Identities = 41/64 (64%), Positives = 56/64 (87%), Gaps = 1/64 (1%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYD-DNGQIESFIEKPQEFISNQ 686
VIC+FPF+ + ++H++HG+EG+I+VTKVEEPSKYGVVV + D G+I F+EKPQ F+SN+
Sbjct: 111 VICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNK 170
Query: 687 INAG 698
INAG
Sbjct: 171 INAG 174
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGGYGTRLRPLTLS PKP
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKP 24
>BC007456-1|AAH07456.1| 420|Homo sapiens GDP-mannose
pyrophosphorylase A protein.
Length = 420
Score = 30.7 bits (66), Expect = 5.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 182 IRALILVGG--YGTRLRPLTLSRPKP 253
++A+IL+GG GTR RPL+ PKP
Sbjct: 2 LKAVILIGGPQKGTRFRPLSFEVPKP 27
>AK222951-1|BAD96671.1| 420|Homo sapiens GDP-mannose
pyrophosphorylase A variant protein.
Length = 420
Score = 30.7 bits (66), Expect = 5.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 182 IRALILVGG--YGTRLRPLTLSRPKP 253
++A+IL+GG GTR RPL+ PKP
Sbjct: 2 LKAVILIGGPQKGTRFRPLSFEVPKP 27
>AK000999-1|BAA91460.1| 420|Homo sapiens protein ( Homo sapiens
cDNA FLJ10137 fis, clone HEMBA1003136, weakly similar to
MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE (EC 2.7.7.13). ).
Length = 420
Score = 30.7 bits (66), Expect = 5.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 182 IRALILVGG--YGTRLRPLTLSRPKP 253
++A+IL+GG GTR RPL+ PKP
Sbjct: 2 LKAVILIGGPQKGTRFRPLSFEVPKP 27
>AF135422-1|AAD38517.1| 399|Homo sapiens GDP-mannose
pyrophosphorylase A protein.
Length = 399
Score = 30.7 bits (66), Expect = 5.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 182 IRALILVGG--YGTRLRPLTLSRPKP 253
++A+IL+GG GTR RPL+ PKP
Sbjct: 2 LKAVILIGGPQKGTRFRPLSFEVPKP 27
>AC053503-4|AAY15053.1| 420|Homo sapiens unknown protein.
Length = 420
Score = 30.7 bits (66), Expect = 5.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 182 IRALILVGG--YGTRLRPLTLSRPKP 253
++A+IL+GG GTR RPL+ PKP
Sbjct: 2 LKAVILIGGPQKGTRFRPLSFEVPKP 27
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,431,920
Number of Sequences: 237096
Number of extensions: 1772614
Number of successful extensions: 3401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3397
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -