Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30687.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-18|CAM36360.1|  365|Caenorhabditis elegans Hypothetical...   109   1e-24
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    33   0.26 
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    33   0.26 
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine re...    30   1.8  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   9.8  

>CU457741-18|CAM36360.1|  365|Caenorhabditis elegans Hypothetical
           protein C42C1.5 protein.
          Length = 365

 Score =  109 bits (263), Expect = 1e-24
 Identities = 46/64 (71%), Positives = 57/64 (89%), Gaps = 1/64 (1%)
 Frame = +3

Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYD-DNGQIESFIEKPQEFISNQ 686
           VIC+FPFK++  +HKNHGKEGTI VTKVEEPSKYGVVV+D D G+I+ F+EKPQE++ N+
Sbjct: 110 VICDFPFKQMVEFHKNHGKEGTIAVTKVEEPSKYGVVVFDQDKGKIDDFVEKPQEYVGNK 169

Query: 687 INAG 698
           INAG
Sbjct: 170 INAG 173



 Score =  101 bits (243), Expect = 4e-22
 Identities = 48/72 (66%), Positives = 59/72 (81%)
 Frame = +1

Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
           VEFANKP+++HQ+EAL E GV  V+LAVSYRAE++E+E+T    +LGV L FS E EPLG
Sbjct: 26  VEFANKPMMLHQMEALAEVGVDTVVLAVSYRAEQLEQEMTVHADRLGVKLIFSLEEEPLG 85

Query: 436 TAGPLALARELL 471
           TAGPLALAR+ L
Sbjct: 86  TAGPLALARKHL 97



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/24 (83%), Positives = 24/24 (100%)
 Frame = +2

Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
           ++ALILVGGYGTRLRPLTL++PKP
Sbjct: 1   MKALILVGGYGTRLRPLTLTQPKP 24


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 265 ANKPILMHQIEALVE-AGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLGTA 441
           A  P++ H I+ L + +G+++++L   + ++     ++       VS+ +  E  PLGTA
Sbjct: 26  AGVPLIEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISRCQQTYRVSIKYLEEPNPLGTA 85

Query: 442 GPL 450
           G L
Sbjct: 86  GGL 88



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 489 ILCIELCVICEFPFKEL-ARYHKNHGKEGTIVVTKV--EEPSKYGVVVYDDNGQIESFIE 659
           +  I   V  + P +++ A+     G    ++ T+   ++   +G VV D  G++  +++
Sbjct: 103 VFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEATRQQSINFGSVVTDSEGRVIHYVD 162

Query: 660 KPQEFISNQINAG 698
           KP  F+S  I+ G
Sbjct: 163 KPTTFVSTNISCG 175


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 265 ANKPILMHQIEALVE-AGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLGTA 441
           A  P++ H I+ L + +G+++++L   + ++     ++       VS+ +  E  PLGTA
Sbjct: 33  AGVPLIEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISRCQQTYRVSIKYLEEPNPLGTA 92

Query: 442 GPL 450
           G L
Sbjct: 93  GGL 95



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 489 ILCIELCVICEFPFKEL-ARYHKNHGKEGTIVVTKV--EEPSKYGVVVYDDNGQIESFIE 659
           +  I   V  + P +++ A+     G    ++ T+   ++   +G VV D  G++  +++
Sbjct: 110 VFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEATRQQSINFGSVVTDSEGRVIHYVD 169

Query: 660 KPQEFISNQINAG 698
           KP  F+S  I+ G
Sbjct: 170 KPTTFVSTNISCG 182



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +2

Query: 185 RALILVGG--YGTRLRPLTLSRPKP 253
           +A++LVGG   GTR RPL+L  PKP
Sbjct: 4   KAVVLVGGPQKGTRFRPLSLQLPKP 28


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 674 KFLWFFYKTFYLTIIIINNHTIFGWLFYFCNHYCTFLPMILVI 546
           +FLW F  +F + I+ I    I    FYF   +C  +P I ++
Sbjct: 245 QFLWMFMYSFGILILRIIREDILPSTFYFWIAWCYTMPFIALM 287


>AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein71 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 659 FYKTFYLTIIIINNHTIFGWLFYFCNHYCTFLPMILVISCKF 534
           F K       I+  H +   L YFC   C F P++L  S ++
Sbjct: 113 FGKKHQAIAYILKIHLVHDVLLYFCYFLCIFAPVVLCASMQY 154


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 8   QNLCLRTYIHTPLETNLAECAY*YL--KNFCISWTGKRSISVE*IQYQFKMCGTDKKLEE 181
           QNL +R  I      NL  C Y Y   +N    W  +    V+  QY F +C   +K  +
Sbjct: 609 QNLKIRIAIRVEKPPNLKYCGYCYCIGRNAWKKWKKRFFCLVQVSQYAFAVCSFRQKKAD 668

Query: 182 IRALILVGGY 211
               I + G+
Sbjct: 669 PTEFIQLDGF 678


>AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical
           protein F49D11.10 protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 588 KVEEPSKYGVVVYDDNGQIESFIEKPQEFISNQI 689
           K + PSK+ + V   NG IE  +E P      QI
Sbjct: 131 KQKNPSKFDICVTGANGSIEKVLEIPSNIRKEQI 164


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 671 FLWFFYKTFYLTIIIINNHTIFGWLFYFCNHYCTFLPMIL 552
           F +FF   F  TI+I++N  IFG      N   T LP++L
Sbjct: 51  FFFFFVGIFLNTILIVSNSAIFG------NISLTILPIML 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,718
Number of Sequences: 27780
Number of extensions: 289405
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)