Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30686.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   144   6e-36
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   144   6e-36
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    39   4e-04
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    28   0.79 
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    27   2.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.4  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   4.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.6  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    25   7.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.7  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  144 bits (350), Expect = 6e-36
 Identities = 71/99 (71%), Positives = 83/99 (83%)
 Frame = +1

Query: 211 SLVNWRKPSASTRDCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE 390
           +L+  + P     D +   GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+  GARE
Sbjct: 100 ALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGARE 159

Query: 391 AAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERV 507
           AAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERV
Sbjct: 160 AAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERV 198



 Score =  124 bits (299), Expect = 9e-30
 Identities = 71/113 (62%), Positives = 85/113 (75%), Gaps = 5/113 (4%)
 Frame = +2

Query: 5   DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 184
           D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A R
Sbjct: 33  DISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATR 90

Query: 185 IVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
           IVKHAFEII LLT +NPLQVLV A++   P +   R+GS   VR Q V V PL
Sbjct: 91  IVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPL 143


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  144 bits (350), Expect = 6e-36
 Identities = 71/99 (71%), Positives = 83/99 (83%)
 Frame = +1

Query: 211 SLVNWRKPSASTRDCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE 390
           +L+  + P     D +   GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+  GARE
Sbjct: 100 ALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGARE 159

Query: 391 AAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERV 507
           AAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERV
Sbjct: 160 AAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERV 198



 Score =  124 bits (299), Expect = 9e-30
 Identities = 71/113 (62%), Positives = 85/113 (75%), Gaps = 5/113 (4%)
 Frame = +2

Query: 5   DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 184
           D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A R
Sbjct: 33  DISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATR 90

Query: 185 IVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
           IVKHAFEII LLT +NPLQVLV A++   P +   R+GS   VR Q V V PL
Sbjct: 91  IVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPL 143


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 31/54 (57%)
 Frame = +2

Query: 116 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTALSTLDPV 277
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  A++ + P+
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPL 175


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 74  RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH--LLT---GENPL 238
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H  LLT    E  L
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMHNGLLTRNIWEKGL 447

Query: 239 QVLVTALSTLDP 274
            ++   L++L P
Sbjct: 448 SIIEEQLNSLQP 459


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 361 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVVNPTVKIYY 534
           I++L     +    N K + E V D        S +S  +KK   LER++N  +   Y
Sbjct: 314 IYMLVDEKNKFKTENFKKVLE-VLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRY 370


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 266 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 382
           ++PV  R  SVV    V +P+ +H   +S  ++G   Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 124 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 246
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 436 ELINAAKGSSNSYAIKKKDELERVV 510
           E +N+   + NS  ++KKDELE+ +
Sbjct: 133 EKLNSEISNQNSLILQKKDELEKSI 157


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 543 DDLIVYFNGWIYNTLQLVLL 484
           DD+ V   GW+Y+ L + LL
Sbjct: 128 DDVYVGIGGWVYSLLAMYLL 147


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 227  ENPLQVLVTALSTLDPVKIRL 289
            E P Q++VT    LDP+++ L
Sbjct: 1880 EQPRQIIVTRKGMLDPLEVHL 1900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,325
Number of Sequences: 5004
Number of extensions: 45178
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)