Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30686.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 158 3e-39
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 158 3e-39
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 32 0.26
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 31 0.46
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076... 29 1.8
06_01_0717 - 5219848-5220178,5220268-5220617,5221807-5221982,522... 28 5.6
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 7.5
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 7.5
05_06_0118 + 25735966-25737601,25737698-25738488 25 8.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 158 bits (383), Expect = 3e-39
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1
Query: 250 DCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECV 429
D IINSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+
Sbjct: 109 DAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECL 168
Query: 430 ADELINAAKGSSNSYAIKKKDELERV 507
ADELINAAKGSSNSYAIKKKDE+ERV
Sbjct: 169 ADELINAAKGSSNSYAIKKKDEIERV 194
Score = 144 bits (348), Expect = 5e-35
Identities = 76/115 (66%), Positives = 90/115 (78%), Gaps = 6/115 (5%)
Frame = +2
Query: 2 SDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 178
+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MA
Sbjct: 25 NDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMA 84
Query: 179 VRIVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
VRIVKHA EIIHLLT NP+QV+V A+ P + R+GS VR Q V + PL
Sbjct: 85 VRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPL 139
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 158 bits (383), Expect = 3e-39
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1
Query: 250 DCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECV 429
D IINSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+
Sbjct: 110 DAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECL 169
Query: 430 ADELINAAKGSSNSYAIKKKDELERV 507
ADELINAAKGSSNSYAIKKKDE+ERV
Sbjct: 170 ADELINAAKGSSNSYAIKKKDEIERV 195
Score = 143 bits (347), Expect = 7e-35
Identities = 75/115 (65%), Positives = 90/115 (78%), Gaps = 6/115 (5%)
Frame = +2
Query: 2 SDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 178
+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MA
Sbjct: 26 NDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMA 85
Query: 179 VRIVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
VRIVKHA EIIHLLT NP+QV+V A+ P + R+GS VR Q V + PL
Sbjct: 86 VRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPL 140
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 401 LNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 264
L+A+SR P + +I RR+G + + RR+ P +P +R PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 31.5 bits (68), Expect = 0.46
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 313 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 471
RR+AV + +RR+ A WL GAR A R A E++ +A G S
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>03_05_1154 +
30803983-30806047,30806152-30806968,30807362-30807655,
30808214-30808451
Length = 1137
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 125 LTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE--NPLQVLVTALSTLDPVKIRLGSV 298
L N +++H R +GK A + H ++ ++ E NP+ + VTA + K+ ++
Sbjct: 151 LLNPILVHARTSGKPFYA---IMHRIDVGLVIDLEPVNPVDLPVTATGAIKSYKLAARAI 207
Query: 299 VRVQ 310
R+Q
Sbjct: 208 ARLQ 211
>06_01_0717 -
5219848-5220178,5220268-5220617,5221807-5221982,
5222065-5222302,5224492-5224657,5224792-5225159,
5225261-5225436,5227742-5227976,5228242-5228493,
5228513-5228848
Length = 875
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -3
Query: 276 TGSRVDNAVTSTCRGFSPVNK*IISNACLTIRTAISFLPLFRPCIIREFVRRSTIGH 106
TG RVD V GF K T + I PL+R C+ + + IG+
Sbjct: 725 TGERVDADVVVLATGFRGDQKLTDMFVSATFKQQIVAAPLYRQCVHPRIPQMAVIGY 781
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 116 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 226
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 179 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNEVNIL 48
RP+VF + R++ E+ + RLG G YG V+ +LN+ ++
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLNDGRVV 620
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 24.6 bits (51), Expect(2) = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 155 NNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTALSTLDPVKIRLGS 295
N G+KL + E +HL+ + + +T +STL K+ L S
Sbjct: 727 NTGRKLGLYNPCEQTIENLHLIRRRSNRTLELTEISTLPDAKMFLRS 773
Score = 21.0 bits (42), Expect(2) = 8.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 413 QSQSVLQMN*LMQLRVHLTPTPSKR 487
+++S+L + L Q R+H TP + R
Sbjct: 783 RARSLLTLQVLHQGRIHFTPETNLR 807
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,131
Number of Sequences: 37544
Number of extensions: 296273
Number of successful extensions: 735
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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