Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30686.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               169   1e-42
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   0.82 
SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.5  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   4.4  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              27   7.6  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  169 bits (411), Expect = 1e-42
 Identities = 83/98 (84%), Positives = 88/98 (89%)
 Frame = +1

Query: 214 LVNWRKPSASTRDCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREA 393
           L+    P     + IINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE+
Sbjct: 170 LLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARES 229

Query: 394 AFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERV 507
           AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELERV
Sbjct: 230 AFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERV 267



 Score =  162 bits (393), Expect = 2e-40
 Identities = 81/114 (71%), Positives = 92/114 (80%), Gaps = 5/114 (4%)
 Frame = +2

Query: 2   SDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV 181
           SD+SL DYI+VKEKY+ YLPH+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM V
Sbjct: 99  SDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTV 158

Query: 182 RIVKHAFEIIHLLTGENPLQVLVTALSTLDP----VKI-RLGSVVRVQFVVKPL 328
           RI+KH+FEIIHLLTGENPLQVLV A+    P     +I R G+V R    V PL
Sbjct: 159 RIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPL 212


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 412 TIAECVADELINAAKGSSNSY--AIKKKDELER 504
           T  +C+ DEL +  +G  NSY   +K+K+ELER
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELER 454


>SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 421 ECVADELINAAKGSSNSYAIKKKDELERVVN-PTV 522
           EC   +LIN  KG S     +KK E +RVVN PT+
Sbjct: 302 ECDTWDLINVGKGRSRKMLGEKKAEGKRVVNKPTI 336


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 450  CIN*FICNTLCDCFNISECSLTCTC 376
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 432 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 343
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 386 RAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPELIMQSRVL 240
           R P    +IA   R+   T  A ++T P+RP   ++ +G  L+  ++ L
Sbjct: 461 RRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQTKKGNRLMSPTKEL 509


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 459 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPDC 358
           T  C +   C +  +C + SEC  T  CA   +C
Sbjct: 94  TRECESTSECESTTECESTSECESTSECASTTEC 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,696
Number of Sequences: 59808
Number of extensions: 361647
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)