Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30686.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   170   7e-43
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   1.7  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    29   1.7  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  170 bits (413), Expect = 7e-43
 Identities = 82/98 (83%), Positives = 88/98 (89%)
 Frame = +1

Query: 214 LVNWRKPSASTRDCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREA 393
           L+    P     + +INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLLCTGAREA
Sbjct: 108 LLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREA 167

Query: 394 AFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERV 507
           AFRN+KTIAEC+ADELINAAKGSSNSYAIKKKDELERV
Sbjct: 168 AFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERV 205



 Score =  151 bits (366), Expect = 3e-37
 Identities = 80/114 (70%), Positives = 88/114 (77%), Gaps = 5/114 (4%)
 Frame = +2

Query: 2   SDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV 181
           SD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM V
Sbjct: 37  SDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTV 96

Query: 182 RIVKHAFEIIHLLTGENPLQVLVTALSTLDP----VKI-RLGSVVRVQFVVKPL 328
           RIVKHAFEII+LLTGENP+QVLV A+    P     +I R G+V R    V PL
Sbjct: 97  RIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPL 150


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = -3

Query: 531 VYFNGWIYNTLQLVLLFDGVGVR*TLSCIN*FIC-NTLCDCFNISECSLTCTCAQKPDCL 355
           VY+NG  YNT+ +     G   + T  C+    C N+ C C + S  +  C  +     L
Sbjct: 304 VYYNGQCYNTVNI-----GFQCQITQQCLGNSQCQNSFCQCTSGSPNNGICPTSPNTSNL 358

Query: 354 VDSAQG*NI--NGLTTNCTRTTDPSRIF 277
             S Q   +  N    NC  T  P+  F
Sbjct: 359 CSSGQTVQLDNNNQPINCLVTVCPNTSF 386


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 260 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 433
           S  D + ++ G  V V  +  P   +    S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 402 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 292
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 402 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 292
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 402 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 292
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 402 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 292
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -3

Query: 453 SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD----PS 286
           SC   F+ N    C N +EC  T +  + P  LVD   G   +  T   T   D    PS
Sbjct: 200 SCKKGFLRNRQGQCVNPTECPATGSTDENPCNLVDCRTGHQCSMSTGKPTCVPDYSDTPS 259

Query: 285 RIFTGSRVD 259
            +F G+  D
Sbjct: 260 PLFPGNGSD 268


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 453 SCIN*FICNTLCDCFNI-SECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD 292
           SC    IC   C    I S+CS TC  A  P C   S    N    +T C  T D
Sbjct: 55  SCQQAPICQPQCPRAEINSDCSATCVRACIPSC---SKSTGNTFACSTTCESTCD 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,534
Number of Sequences: 27780
Number of extensions: 266325
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)