Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30686.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   158   2e-39
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   157   3e-39
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   157   3e-39
At4g39450.1 68417.m05582 expressed protein                             29   2.7  
At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    28   4.7  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    27   8.3  
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    27   8.3  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  158 bits (384), Expect = 2e-39
 Identities = 76/86 (88%), Positives = 82/86 (95%)
 Frame = +1

Query: 250 DCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECV 429
           D I+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+
Sbjct: 117 DAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECL 176

Query: 430 ADELINAAKGSSNSYAIKKKDELERV 507
           ADELINAAKGSSNSYAIKKKDE+ERV
Sbjct: 177 ADELINAAKGSSNSYAIKKKDEIERV 202



 Score =  141 bits (341), Expect = 3e-34
 Identities = 75/115 (65%), Positives = 91/115 (79%), Gaps = 6/115 (5%)
 Frame = +2

Query: 2   SDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 178
           +D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMA
Sbjct: 33  TDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 92

Query: 179 VRIVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
           VRIVKHA EIIHLL+  NP+QV++ A+    P +   R+GS  VVR Q V + PL
Sbjct: 93  VRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  157 bits (382), Expect = 3e-39
 Identities = 75/86 (87%), Positives = 82/86 (95%)
 Frame = +1

Query: 250 DCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECV 429
           D I+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+
Sbjct: 117 DAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECL 176

Query: 430 ADELINAAKGSSNSYAIKKKDELERV 507
           ADELINAAKGSSNSYAIKKKDE+ERV
Sbjct: 177 ADELINAAKGSSNSYAIKKKDEIERV 202



 Score =  140 bits (340), Expect = 4e-34
 Identities = 75/115 (65%), Positives = 91/115 (79%), Gaps = 6/115 (5%)
 Frame = +2

Query: 2   SDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 178
           +D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMA
Sbjct: 33  TDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 92

Query: 179 VRIVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
           VRIVKHA EIIHLL+  NP+QV++ A+    P +   R+GS  VVR Q V + PL
Sbjct: 93  VRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  157 bits (382), Expect = 3e-39
 Identities = 75/86 (87%), Positives = 82/86 (95%)
 Frame = +1

Query: 250 DCIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECV 429
           D I+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+
Sbjct: 117 DAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECL 176

Query: 430 ADELINAAKGSSNSYAIKKKDELERV 507
           ADELINAAKGSSNSYAIKKKDE+ERV
Sbjct: 177 ADELINAAKGSSNSYAIKKKDEIERV 202



 Score =  140 bits (340), Expect = 4e-34
 Identities = 75/115 (65%), Positives = 91/115 (79%), Gaps = 6/115 (5%)
 Frame = +2

Query: 2   SDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 178
           +D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMA
Sbjct: 33  TDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMA 92

Query: 179 VRIVKHAFEIIHLLTGENPLQVLVTALSTLDPVK--IRLGS--VVRVQFV-VKPL 328
           VRIVKHA EIIHLL+  NP+QV++ A+    P +   R+GS  VVR Q V + PL
Sbjct: 93  VRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +1

Query: 328 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 471
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 227 ENPLQVLVTALSTLDPVKIRLGSVVRVQFVVKPLMFHPCAESTK 358
           E+ +Q ++ A+S    +K+R   V+     ++PL   P A+ST+
Sbjct: 373 EDEIQFILDAISDYLNIKVRRTDVLSAWSGIRPLAMDPTAKSTE 416


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 308 QFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN 439
           +F ++P+ F    + TK    CA V +    +ILK S  +L  +
Sbjct: 733 KFSIQPVRFTALFKMTKVKDLCAVVELEKLIDILKHSHELLSQD 776


>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 62  HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 163
           HS+ + +     KA  P V   TNSL +  +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,337
Number of Sequences: 28952
Number of extensions: 238197
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)