Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30684.Seq
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.21 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 619 IFYLSINFIAVTLHRDC-FIFYVKEVLWCCKFVSY 720
           IF + + F+    H  C FI +   +L+CC F+ +
Sbjct: 155 IFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIFF 189



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 619 IFYLSINFIAVTLHR---DC-FIFYVKEVLWCCKFVSY 720
           I+Y    FI  T+H     C + FY   +L+CC F+ +
Sbjct: 238 IYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIF 275


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 119 LLALFCRIFLKHICYY 72
           L A +C+   K +CYY
Sbjct: 15  LFAAYCKAESKVVCYY 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,245
Number of Sequences: 336
Number of extensions: 3593
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)