Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30682.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 109 6e-25
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 42 1e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 38 0.002
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 37 0.003
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 35 0.012
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 32 0.11
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.19
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 31 0.19
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 30 0.33
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 30 0.44
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 30 0.44
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.0
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.0
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.8
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 27 4.1
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 26 5.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 7.2
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 26 7.2
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 7.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 7.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.5
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 109 bits (261), Expect = 6e-25
Identities = 64/188 (34%), Positives = 91/188 (48%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+D+ D R+ D+V+I PCP +KY +R+ +L
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F G+ K F
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVS 197
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSGYDDIGGCRKQLGAN*GDGGVATASSFTVQGYWSEA 762
+N + GYDDIGGCR+Q+ + + +
Sbjct: 198 QDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKP 257
Query: 763 PRGILMYG 786
PRGILMYG
Sbjct: 258 PRGILMYG 265
Score = 88.6 bits (210), Expect = 9e-19
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV 256
GKRRK+TV
Sbjct: 81 GKRRKDTV 88
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 656
VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VG
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVG 222
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +2
Query: 692 AQIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
AQI+E+VELPLRHP LFK+IG+K GPPG
Sbjct: 234 AQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPG 268
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+IKE++ELP++HP LF+++G+ GPPG
Sbjct: 156 EIKEVIELPVKHPELFESLGIPQPKGILLYGPPG 189
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E++ELPL++P LF +G+K GPPG
Sbjct: 143 ELREVIELPLKNPELFLRVGIKPPKGVLLYGPPG 176
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+IKE VELPL HP L++ +G+K G PG
Sbjct: 202 EIKEAVELPLTHPELYEEMGIKPPKGVILYGAPG 235
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 692 AQIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
AQI+++VELP ++P LFK + GPPG
Sbjct: 289 AQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPG 323
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
++KE VE PL H F +GV+ GPPG
Sbjct: 559 KLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPG 592
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
Q+KEMV LPL +P +F+ ++ GPPG
Sbjct: 277 QLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPG 310
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E VELPL L++ IG+ GPPG
Sbjct: 145 EVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPG 178
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E+VELPL P F +G+ GPPG
Sbjct: 190 RLREVVELPLLSPERFVKLGIDPPKGIMLYGPPG 223
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
DH L +H PA+ LK I A++ G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
Q+KEMV LPL +P +F + + GPPG
Sbjct: 383 QLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPG 416
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 29.9 bits (64), Expect = 0.44
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
++ E+V +P++HP +++ G+ GPPG
Sbjct: 185 ELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPG 218
Score = 27.5 bits (58), Expect = 2.4
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++ + P++ P L++++G+ GPPG
Sbjct: 503 ELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPG 536
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -2
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -2
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 391 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 281
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 27 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 201 NS 206
S
Sbjct: 343 RS 344
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
++ E + LP++ F+ +GVK GPPG
Sbjct: 196 ELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPG 229
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 391 LVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGF 248
L FH ++ D W PH+ + G F H + +G + R GF
Sbjct: 177 LGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGRGGF 224
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 99 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 698 IKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+KE V LP++ P LF + G K + GPPG
Sbjct: 141 LKETVLLPIKLPQLF-SHGRKPWSGILLYGPPG 172
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 576 VAPDTVIHCDGEPIKREEEEEALNA 650
V PD + D E I+REEE++A A
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAA 224
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 PD-DLSTAILRRKDRPNRLIVEEAVSD 154
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 607 VNRLNVRKKRKH*MLSGYDDI 669
+N VR++R H L GYDDI
Sbjct: 437 INGKYVRRERPHDQLIGYDDI 457
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 137 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,006
Number of Sequences: 5004
Number of extensions: 67614
Number of successful extensions: 220
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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