Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30682.Seq
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 127 1e-29
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 127 1e-29
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 121 5e-28
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 42 6e-04
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 42 6e-04
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 38 0.008
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 38 0.008
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 38 0.008
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 37 0.018
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 36 0.031
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 36 0.031
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 36 0.031
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 34 0.095
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 33 0.17
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 31 0.67
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.2
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.5
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 29 2.7
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 29 3.6
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 29 3.6
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 29 3.6
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 28 8.3
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 127 bits (306), Expect = 1e-29
Identities = 73/190 (38%), Positives = 99/190 (52%), Gaps = 2/190 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G S K I A +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSVEFKVIETDPAEYC 178
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLS--GYDDIGGCRKQLGAN*GDGGVATASSFTVQGYWS 756
++ T K+ L GYDD+GG RKQ+ + +
Sbjct: 179 VVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV 238
Query: 757 EAPRGILMYG 786
+ P+GIL+YG
Sbjct: 239 KPPKGILLYG 248
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/49 (69%), Positives = 43/49 (87%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 656
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VG
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDEVG 205
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 677 VANNWAQIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
V AQI+E+VELPLRHP LFK+IGVK GPPG
Sbjct: 212 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 251
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E V+ P+ HP F+ G+ GPPG
Sbjct: 491 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 127 bits (306), Expect = 1e-29
Identities = 73/190 (38%), Positives = 99/190 (52%), Gaps = 2/190 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G S K I A +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSVEFKVIETDPAEYC 178
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLS--GYDDIGGCRKQLGAN*GDGGVATASSFTVQGYWS 756
++ T K+ L GYDD+GG RKQ+ + +
Sbjct: 179 VVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV 238
Query: 757 EAPRGILMYG 786
+ P+GIL+YG
Sbjct: 239 KPPKGILLYG 248
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/65 (67%), Positives = 56/65 (86%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/49 (69%), Positives = 43/49 (87%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 656
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VG
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDDVG 205
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 677 VANNWAQIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
V AQI+E+VELPLRHP LFK+IGVK GPPG
Sbjct: 212 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 251
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E V+ P+ HP F+ G+ GPPG
Sbjct: 491 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 121 bits (292), Expect = 5e-28
Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G S K I A +
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSIEFKVIETDPAEYC 179
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLS--GYDDIGGCRKQLGAN*GDGGVATASSFTVQGYWS 756
++ T K+ L GYDD+GG RKQ+ + +
Sbjct: 180 VVAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV 239
Query: 757 EAPRGILMYG 786
+ P+GIL+YG
Sbjct: 240 KPPKGILLYG 249
Score = 84.2 bits (199), Expect = 9e-17
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/49 (69%), Positives = 43/49 (87%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 656
VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+EE L+ VG
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-LDEVG 206
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 677 VANNWAQIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
V AQI+E+VELPLRHP LFK+IGVK GPPG
Sbjct: 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 252
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E V+ P+ HP F+ G+ GPPG
Sbjct: 492 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 525
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+IKE++ELP++HP LF+++G+ GPPG
Sbjct: 172 EIKEVIELPIKHPELFESLGIAQPKGVLLYGPPG 205
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+IKE++ELP++HP LF+++G+ GPPG
Sbjct: 172 EIKEVIELPIKHPELFESLGIAQPKGVLLYGPPG 205
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+IKE VELPL HP L++ IG+K G PG
Sbjct: 199 EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPG 232
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+IKE VELPL HP L++ IG+K G PG
Sbjct: 199 EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPG 232
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+I+E+VELP+ HP F +G+ C GPPG
Sbjct: 216 KIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPG 249
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E+VELP+ HP F +G+ C GPPG
Sbjct: 179 KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+I+E VELPL H L+K IG+ GPPG
Sbjct: 166 EIREAVELPLTHHELYKQIGIDPPRGVLLYGPPG 199
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E +ELPL +P LF +G+K GPPG
Sbjct: 150 ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPG 183
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++E +ELPL +P LF +G+K GPPG
Sbjct: 150 ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPG 183
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 34.3 bits (75), Expect = 0.095
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
Q + P++ P ++KA GV L F GPPG
Sbjct: 539 QFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPG 572
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 695 QIKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
+++ V P+ +P FK IGVK + GPPG
Sbjct: 244 ELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPG 277
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 698 IKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
IKEM+ELP + P +F ++L + GPPG
Sbjct: 856 IKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPG 888
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 698 IKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
++E+V LPLR P LFK +K GPPG
Sbjct: 426 LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPG 458
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 695 QIKEMVE---LPLRHPSLFKAIGVKLHAAFSCMGPPG 796
QI+E+VE LP+ H F+ +GV+ GPPG
Sbjct: 179 QIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPG 215
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 698 IKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
++E+V LPLR P LF +K GPPG
Sbjct: 533 LQELVMLPLRRPDLFTGGLLKPCRGILLFGPPG 565
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 698 IKEMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
++E+V LPLR P LF +K GPPG
Sbjct: 528 LQELVMLPLRRPDLFTGGLLKPCRGILLFGPPG 560
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 695 QIKEMVE---LPLRHPSLFKAIGVKLHAAFSCMGPPG 796
QI+E+VE LP+ H F+ +G++ GPPG
Sbjct: 178 QIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPG 214
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 704 EMVELPLRHPSLFKAIGVKLHAAFSCMGPPG 796
E+VE L+ P F A+G K+ +GPPG
Sbjct: 241 EVVEF-LKKPERFTAVGAKIPKGVLLIGPPG 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,081,084
Number of Sequences: 28952
Number of extensions: 380242
Number of successful extensions: 1078
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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