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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30681.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   121   1e-28
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    43   4e-05
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    42   9e-05
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    42   9e-05
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    40   3e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    36   0.006
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    34   0.019
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    34   0.025
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    32   0.076
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    32   0.100
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    31   0.13 
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    31   0.23 
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    30   0.30 
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    29   0.53 
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   0.93 
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    29   0.93 
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   0.93 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.6  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   2.8  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   3.8  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    26   5.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.6  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   6.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.7  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  121 bits (291), Expect = 1e-28
 Identities = 54/79 (68%), Positives = 65/79 (82%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           VRG MR VEFKVV+  P  F IV+ DT+IH +GEPI RE+EE +L  VGYDDIGGCR+Q+
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQM 233

Query: 690 AQIKEMVELPLRHPSLFKA 746
           AQI+E+VELPLRHP LFK+
Sbjct: 234 AQIRELVELPLRHPQLFKS 252



 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 43/100 (43%), Positives = 63/100 (63%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGA 522
           P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F   G+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177



 Score = 88.6 bits (210), Expect = 8e-19
 Identities = 41/68 (60%), Positives = 53/68 (77%)
 Frame = +2

Query: 53  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 233 GKRRKETV 256
           GKRRK+TV
Sbjct: 81  GKRRKDTV 88


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 15/30 (50%), Positives = 25/30 (83%)
 Frame = +3

Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
           Y+ +GG  KQ+ +IKE++ELP++HP LF++
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFES 173


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           D +P+    + +      Y DIGG   Q+ +IKE VELPL HP L++
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYE 218


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +3

Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           +AV +  IGG + Q+AQI+++VELP ++P LFK
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFK 306



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           RE   E+ N V + DIGG  +   ++KE VE PL H   F
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETF 574


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           V Y D+GGC++Q+ +++E+VELPL  P  F
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERF 205


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           + +  +GG  +Q+ +++E++ELPL++P LF
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELF 158


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 597 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           H D + I+  +       + ++ IGG    + Q+KEMV LPL +P +F
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVF 398


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           +++ ++ +GG    + Q+KEMV LPL +P +F+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQ 293


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           K E   E  + +   DIGG    + ++ E+V +P++HP +++
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQ 201


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 31.9 bits (69), Expect = 0.100
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           V +DDIGG  +    +++ ++LPL+ P LF
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           V Y D+GG   Q  +++E VELPL    L++
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYR 161


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           V +DDIGG  + + Q+ + V  PL++P +F
Sbjct: 86  VSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
           DH  L  +H PA+ LK     I   A++  G   T   +PV P+   ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           Y DIGG  KQ+ ++ E + LP++    F+
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFR 212


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           V +DDI G       +KE V LP++ P LF
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLF 155


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 78  LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 391 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 281
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 27  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 201 NS 206
            S
Sbjct: 343 RS 344


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 576 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 665
           V PD   + D E I+REEE++A  A   ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 391 LVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGF 248
           L FH ++ D   W PH+ +   G F  H     + +G +  R    GF
Sbjct: 177 LGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGRGGF 224


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 99  SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
           SSV       S S   ++M++ + +F+    S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 77  PD-DLSTAILRRKDRPNRLIVEEAVSD 154
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 137 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,026
Number of Sequences: 5004
Number of extensions: 61894
Number of successful extensions: 207
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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