Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30681.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 121 1e-28
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 43 4e-05
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 42 9e-05
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 42 9e-05
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 40 3e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 36 0.006
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 34 0.019
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 34 0.025
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 32 0.076
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 32 0.100
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.13
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 31 0.23
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 30 0.30
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 29 0.53
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 0.93
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 0.93
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 0.93
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.6
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 3.8
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 26 5.0
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 6.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.6
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 8.7
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 121 bits (291), Expect = 1e-28
Identities = 54/79 (68%), Positives = 65/79 (82%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQM 233
Query: 690 AQIKEMVELPLRHPSLFKA 746
AQI+E+VELPLRHP LFK+
Sbjct: 234 AQIRELVELPLRHPQLFKS 252
Score = 95.9 bits (228), Expect = 5e-21
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+D+ D R+ D+V+I PCP +KY +R+ +L
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGA 522
P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F G+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177
Score = 88.6 bits (210), Expect = 8e-19
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV 256
GKRRK+TV
Sbjct: 81 GKRRKDTV 88
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 43.2 bits (97), Expect = 4e-05
Identities = 15/30 (50%), Positives = 25/30 (83%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
Y+ +GG KQ+ +IKE++ELP++HP LF++
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFES 173
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYE 218
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
+AV + IGG + Q+AQI+++VELP ++P LFK
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFK 306
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
RE E+ N V + DIGG + ++KE VE PL H F
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETF 574
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 40.3 bits (90), Expect = 3e-04
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V Y D+GGC++Q+ +++E+VELPL P F
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERF 205
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 35.9 bits (79), Expect = 0.006
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
+ + +GG +Q+ +++E++ELPL++P LF
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELF 158
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 34.3 bits (75), Expect = 0.019
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 597 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVF 398
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 33.9 bits (74), Expect = 0.025
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
+++ ++ +GG + Q+KEMV LPL +P +F+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQ 293
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 32.3 bits (70), Expect = 0.076
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
K E E + + DIGG + ++ E+V +P++HP +++
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQ 201
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 31.9 bits (69), Expect = 0.100
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDIGG + +++ ++LPL+ P LF
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
V Y D+GG Q +++E VELPL L++
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYR 161
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDIGG + + Q+ + V PL++P +F
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
DH L +H PA+ LK I A++ G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.53
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
Y DIGG KQ+ ++ E + LP++ F+
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFR 212
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.93
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 28.7 bits (61), Expect = 0.93
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDI G +KE V LP++ P LF
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.93
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 391 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 281
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 27 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 201 NS 206
S
Sbjct: 343 RS 344
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 576 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 665
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 391 LVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGF 248
L FH ++ D W PH+ + G F H + +G + R GF
Sbjct: 177 LGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGRGGF 224
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 99 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 PD-DLSTAILRRKDRPNRLIVEEAVSD 154
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 137 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,026
Number of Sequences: 5004
Number of extensions: 61894
Number of successful extensions: 207
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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