Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30681.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        135   3e-32
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   2e-04
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          42   4e-04
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                41   0.001
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         35   0.081
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         34   0.11 
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_19460| Best HMM Match : AAA (HMM E-Value=0)                         29   5.3  
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)                 28   7.0  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    28   7.0  
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        28   9.2  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        28   9.2  
SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  135 bits (327), Expect = 3e-32
 Identities = 59/65 (90%), Positives = 64/65 (98%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGCRKQL
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGCRKQL 167

Query: 690 AQIKE 704
           AQIKE
Sbjct: 168 AQIKE 172



 Score =  101 bits (241), Expect = 8e-22
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           RE   E  N V +DDIGG      +++E+V+ P+ HP  F
Sbjct: 298 RETVVEVPN-VSWDDIGGLEGVKRELQELVQYPVEHPDKF 336



 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
           VIH  G  IK++ E  A   V +  IGG + Q+  ++EM+E+PL +P LF A
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEMPLTNPELFTA 284



 Score = 31.5 bits (68), Expect = 0.75
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           V + D+GG      ++KE VE PL+HP  F+
Sbjct: 534 VHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQ 564


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = +3

Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
           Y+ +GG  KQ+ +IKE++ELP++HP LF+A
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVKHPELFEA 205


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           V+  D +P+    + E      Y DIGG   Q+ +IKE VELPL HP L++
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPLTHPELYE 407


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           V Y DIGGC++Q+ +++E+VE PL HP  F
Sbjct: 81  VTYSDIGGCKEQIDKLREVVETPLLHPERF 110


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           +P+      E    + Y D+GG  +Q+ +++E++ELPL +P LF+
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQ 162


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           V +D +GG  KQ+  +KEM+  PL +P +F
Sbjct: 881 VKFDSVGGLNKQIQALKEMILFPLVYPEVF 910


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +3

Query: 633 EEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
           EE  N V Y +IGG   Q  +I+E VELPL H  L+K
Sbjct: 156 EEKPN-VSYAEIGGMDIQKQEIREAVELPLTHFELYK 191


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
           + + D+GG      +I + ++LPL HP LF A
Sbjct: 809 ISWKDVGGLDSVKEEILDTIQLPLLHPELFAA 840


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 642 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           L    +DD+GG       +++ +E PL HP  F
Sbjct: 478 LQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAF 510


>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
          Length = 340

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 642 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
           L    +DD+GG       +++ +E PL HP  F
Sbjct: 7   LQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAF 39


>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 713
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 63  KREEELELLLETRTEKLSECKKRLLDLEEIIE 94


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 713
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695


>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEM 707
           D +  + EEEEE    +G+D+ G   ++L +I+E+
Sbjct: 255 DDDETEDEEEEEEQPVMGWDEYGTSPQRLQRIREL 289


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 578 HDAKW*WICFDHFELDGAHAPADLKVSSRWIGR*ASMKYGFKYTSNRLP-VRPSTESSIG 402
           H   W  IC+DH++L  AH      V+ R +G  A +K   K T + LP V     S +G
Sbjct: 255 HAGAWGLICYDHWDLHDAH------VACRQVGL-AGVKAVTKETVDGLPRVHLGNVSCVG 307

Query: 401 S 399
           +
Sbjct: 308 N 308


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 578 HDAKW*WICFDHFELDGAHAPADLKVSSRWIGR*ASMKYGFKYTSNRLP-VRPSTESSIG 402
           H   W  IC+DH++L  AH      V+ R +G  A +K   K T + LP V     S +G
Sbjct: 318 HAGAWGLICYDHWDLHDAH------VACRQVGL-AGVKAVTKETVDGLPRVHLGNVSCVG 370

Query: 401 S 399
           +
Sbjct: 371 N 371


>SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 534 EFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDD-IGGCRKQ 686
           +++  +  P PFCI+    VI   G P+ R + + + N   Y   IG   KQ
Sbjct: 117 QYREPQRPPPPFCILNVKKVIKHSGSPVYR-DPDSSQNRYQYSTLIGNSSKQ 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,090,075
Number of Sequences: 59808
Number of extensions: 503849
Number of successful extensions: 1369
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)