Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30681.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 132 3e-31
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 132 3e-31
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 131 4e-31
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 44 1e-04
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 44 1e-04
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 43 2e-04
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 43 2e-04
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 42 6e-04
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 42 6e-04
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 42 6e-04
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 35 0.066
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 35 0.066
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 34 0.12
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 33 0.15
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 33 0.27
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 33 0.27
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.27
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.27
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 31 0.81
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.1
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.4
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 30 1.4
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 30 1.9
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 30 1.9
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 29 3.3
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 29 3.3
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 29 3.3
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 29 3.3
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 28 5.7
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 10.0
At3g21080.1 68416.m02665 ABC transporter-related contains 4 tran... 27 10.0
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 10.0
At1g10180.1 68414.m01148 expressed protein 27 10.0
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 132 bits (318), Expect = 3e-31
Identities = 57/79 (72%), Positives = 71/79 (89%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQM 216
Query: 690 AQIKEMVELPLRHPSLFKA 746
AQI+E+VELPLRHP LFK+
Sbjct: 217 AQIRELVELPLRHPQLFKS 235
Score = 117 bits (282), Expect = 7e-27
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
RE E N V ++DIGG +++E V+ P+ HP F+
Sbjct: 468 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFE 507
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 132 bits (318), Expect = 3e-31
Identities = 57/79 (72%), Positives = 71/79 (89%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQM 217
Query: 690 AQIKEMVELPLRHPSLFKA 746
AQI+E+VELPLRHP LFK+
Sbjct: 218 AQIRELVELPLRHPQLFKS 236
Score = 112 bits (269), Expect = 3e-25
Identities = 47/99 (47%), Positives = 65/99 (65%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRG 161
Score = 84.2 bits (199), Expect = 8e-17
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
RE E N V ++DIGG +++E V+ P+ HP F+
Sbjct: 469 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFE 508
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 131 bits (317), Expect = 4e-31
Identities = 57/79 (72%), Positives = 71/79 (89%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQM 216
Query: 690 AQIKEMVELPLRHPSLFKA 746
AQI+E+VELPLRHP LFK+
Sbjct: 217 AQIRELVELPLRHPQLFKS 235
Score = 117 bits (282), Expect = 7e-27
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/65 (67%), Positives = 56/65 (86%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
RE E N V ++DIGG +++E V+ P+ HP F+
Sbjct: 468 RETVVEVPN-VSWNDIGGLENVKRELQETVQYPVEHPEKFE 507
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLF 740
Y DIGGC++Q+ +I+E+VELP+ HP F
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHPEKF 231
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/30 (50%), Positives = 25/30 (83%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V Y+D+GGC++Q+ +++E+VELP+ HP F
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKF 194
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
YD IGG +Q+ +IKE++ELP++HP LF++
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFES 189
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
YD IGG +Q+ +IKE++ELP++HP LF++
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFES 189
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
V Y+DIGGC Q +I+E VELPL H L+K
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYK 182
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYE 215
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYE 215
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
+P+ E + Y +GG Q+ +++E +ELPL +P LF
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELF 165
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
+P+ E + Y +GG Q+ +++E +ELPL +P LF
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELF 165
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
+ +DDIGG + + +KEMV PL +P F
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFF 407
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
+G++D+GG IKEM+ELP + P +F
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELPSKFPKIF 870
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDIG K +KE+V LPL+ P LF
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPELF 846
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDIG +KE+V LPL+ P LF
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELF 989
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
Y+DIGG KQ+ ++ E + LP+ H F+
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFE 198
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
Y+DIGG KQ+ ++ E + LP+ H F+
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFE 197
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 743
V + DIG + ++E+V LPLR P LFK
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFK 441
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKA 746
V +DD+GG I + V+LPL H LF +
Sbjct: 655 VKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS 686
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDIG + E+V LP+R P LF
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELF 176
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V + DIG +KE+V LPL+ P LF
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELF 976
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DD+GG + ++++ VE P++H + F
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAF 312
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
E +N V + DIG + ++E+V LPLR P LF
Sbjct: 514 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLF 547
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
E +N V + DIG + ++E+V LPLR P LF
Sbjct: 509 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLF 542
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V +DDIG +KE+V LP + P LF
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELF 761
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 740
V ++DIG + E+V LP+R P LF
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELF 377
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 57 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 200
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At3g21080.1 68416.m02665 ABC transporter-related contains 4
transmembrane domains; supported by tandem duplication
of ABC transporter family protein (GI:20260310)
(TIGR_Ath1:At3g21090) [Arabidopsis thaliana]
Length = 255
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 538 SKWSKQIHHHFASWLLIP*YTVTVNRLNVRK-KRKH*MLSAMMTSAVVANNWRKLRRW 708
S +S Q ++F +W + V L++++ K H L ++ T+ A W +L RW
Sbjct: 19 SLYSNQ-DNYFNNWSSLTQSEEVVEELSIQQTKYDHRSLPSLRTAEAEAAEWNELERW 75
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 36 SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 167
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
>At1g10180.1 68414.m01148 expressed protein
Length = 769
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 182 AKMEQLQLFRGDTVLLKGKRRKETVASCSQTII 280
+K++QL + GD +L K K +K +A ++T+I
Sbjct: 576 SKLQQLAIIAGDVLLGKEKLQKILLARLTETVI 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,732
Number of Sequences: 28952
Number of extensions: 342747
Number of successful extensions: 1043
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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