Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30680.Seq
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   102   3e-23
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   102   3e-23
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.4  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   8.4  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   8.4  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  102 bits (244), Expect = 3e-23
 Identities = 47/68 (69%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  G
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAG 122

Query: 431 GKILGFFF 454
           GKILGFF+
Sbjct: 123 GKILGFFY 130



 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  102 bits (244), Expect = 3e-23
 Identities = 47/68 (69%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  G
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAG 122

Query: 431 GKILGFFF 454
           GKILGFF+
Sbjct: 123 GKILGFFY 130



 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 359 FGYLVLTTSGGIMDHEEARRKHLGGKIL 442
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 348 PHDSLVT*SLQQVVASWTMKKPE 416
           P+ S +T SL Q +  W +++PE
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPE 176


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 202 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 62
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,084
Number of Sequences: 5004
Number of extensions: 33777
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)