Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30680.Seq
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          116   1e-26
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   108   3e-24
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           70   1e-12
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    28   3.7  
11_01_0526 - 4140853-4141017,4141416-4141619                           28   4.8  
01_01_0205 + 1764034-1767601,1767934-1767944                           28   4.8  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  116 bits (279), Expect = 1e-26
 Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 123 GKVLGFFY 130



 Score =  109 bits (261), Expect = 2e-24
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  108 bits (259), Expect = 3e-24
 Identities = 49/62 (79%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62



 Score =  105 bits (252), Expect = 2e-23
 Identities = 49/64 (76%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKIL 442
           GK L
Sbjct: 123 GKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 28/67 (41%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GR+  C  ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++G
Sbjct: 62  VELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVG 121

Query: 431 GKILGFF 451
           G++LG+F
Sbjct: 122 GQVLGYF 128



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 251
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 206  HRRV*NR**SQSWQDCLNLTGRLNKCGVISPRFDVPINDI 325
            HRR+      +S +  L   GRLNK GVIS R DV +  +
Sbjct: 906  HRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945


>11_01_0526 - 4140853-4141017,4141416-4141619
          Length = 122

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 272 LNKCGVISPRFDVPINDIERWT 337
           LNKCGVI+P     I+D+   T
Sbjct: 88  LNKCGVIAPNLPTKIDDLSHRT 109


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 260 DLNNLASSVIINDF----KLSDVTVLHHHC*KLNDDFG 159
           DLNNLA SV ++ F    KL D+ + H++   + DD G
Sbjct: 654 DLNNLAGSVDLSSFKRLKKLRDLNLSHNNLSVIMDDEG 691


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,802
Number of Sequences: 37544
Number of extensions: 220610
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)