Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30680.Seq
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   116   1e-26
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   116   1e-26
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   116   1e-26
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   114   4e-26
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         110   6e-25
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    77   7e-15
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          76   2e-14
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.8  
At2g28930.1 68415.m03515 protein kinase (APK1b) identical to pro...    27   9.4  
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr...    27   9.4  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  116 bits (278), Expect = 1e-26
 Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 123 GKVLGFFY 130



 Score =  109 bits (261), Expect = 1e-24
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  116 bits (278), Expect = 1e-26
 Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 123 GKVLGFFY 130



 Score =  109 bits (261), Expect = 1e-24
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  116 bits (278), Expect = 1e-26
 Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 123 GKVLGFFY 130



 Score =  109 bits (261), Expect = 1e-24
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  114 bits (274), Expect = 4e-26
 Identities = 51/68 (75%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLNKCGVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 123 GKVLGFFY 130



 Score =  107 bits (257), Expect = 4e-24
 Identities = 49/62 (79%), Positives = 57/62 (91%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  110 bits (264), Expect = 6e-25
 Identities = 48/68 (70%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L GRLN CGVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++G
Sbjct: 69  VELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVG 128

Query: 431 GKILGFFF 454
           GK+LGFF+
Sbjct: 129 GKVLGFFY 136



 Score =  103 bits (248), Expect = 5e-23
 Identities = 48/62 (77%), Positives = 55/62 (88%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 249 IV 254
           IV
Sbjct: 67  IV 68


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 33/68 (48%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           ++L GR+N C  ++ R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++G
Sbjct: 62  VDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVG 121

Query: 431 GKILGFFF 454
           G++LGFF+
Sbjct: 122 GQVLGFFY 129



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 251
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/67 (49%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 LNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           ++L GR+N C  ++ R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++G
Sbjct: 62  VDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVG 121

Query: 431 GKILGFF 451
           G++LGFF
Sbjct: 122 GQVLGFF 128



 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 251
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 147 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 254
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At2g28930.1 68415.m03515 protein kinase (APK1b) identical to
           protein kinase APK1B [Arabidopsis thaliana]
           SWISS-PROT:P46573
          Length = 423

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 257 LNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPD 147
           L+N  +SVI  DFK S++ +   +  KL+ DFG   D
Sbjct: 204 LHNAETSVIYRDFKTSNILLDSEYNAKLS-DFGLAKD 239


>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 260

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -2

Query: 260 DLNNLASSVIINDFKLSDVTV----LHHHC*KLNDDFGTGPDEDLSFPSLFSIMY 108
           DLNN  S++    F  S  ++    LHHH  +L    G  PD   +F S  S ++
Sbjct: 27  DLNNNNSNLHFQTFHPSSTSLESLFLHHHQQQLLHFPGNSPDSSNNFSSTSSFLH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,366,496
Number of Sequences: 28952
Number of extensions: 180189
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)