Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30678.Seq
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.098
SB_4319| Best HMM Match : Na_H_Exchanger (HMM E-Value=0.0059) 28 2.8
SB_56669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76) 28 3.7
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 28 3.7
SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08) 28 3.7
SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082) 28 3.7
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 4.8
SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0) 27 4.8
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 27 8.5
SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 33.1 bits (72), Expect = 0.098
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 92 GLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTATKKFG 271
GL TR++ DF P + ++ +NI + EK NL + A+ H A K+ G
Sbjct: 1400 GLTYTRDVAWDFFLNPSCFVRIYSSEVNILDAVEKENLAHLMASMHLALRHQDGADKESG 1459
>SB_4319| Best HMM Match : Na_H_Exchanger (HMM E-Value=0.0059)
Length = 410
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 298 SQFQN*YNLPKFLCCSPVMMHSTLITFSNCFQI*LFLRFFDIDHYFMKFNLCWWCPNK 125
+ F N + F C + HS + F N F+ + + FM F LCWW PNK
Sbjct: 246 ASFDNVLCISGFGVCIGLSFHSGNLVF-NIFRAPIEVLIGLAFGVFMGF-LCWWFPNK 301
>SB_56669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 313 NSAVVYRRAVGMLKKDIVDEFIRDQTLSKIK 405
N+ V+ G LKK V EF++++T+ KI+
Sbjct: 6 NNENVHHPITGSLKKGSVFEFVKNETMKKIQ 36
>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
Length = 715
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 11 YKKFQNCDNAI--LLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIM 169
YKK + A LL+ LLQ ++ + +++TRE + +RTP Q HK++
Sbjct: 213 YKKLTDLVEAQNHLLSSGAPLLQHIHAQSAIQSTRE---ELVRTPEPQTTDHKVI 264
>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
Length = 498
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
W DY+++EI NG +++ R V
Sbjct: 186 WRDYLDYEIANGEHRRVVILFERCV 210
>SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)
Length = 318
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +2
Query: 38 AILLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKA 211
AI + P + + H +K L +DF PP Q H + KS N K+
Sbjct: 202 AIAKSQSPSEVSVISHHKNIKKKTLLQKDFPNIPPPQSNFHPFVPTSLKSSSMYNNKS 259
>SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)
Length = 319
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
W DY+++EI NG +++ R V
Sbjct: 239 WRDYLDYEIANGEHRRVVILFERCV 263
>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1219
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 292 FQN*YNLPKFLCCSPVMMHSTLITFS 215
F++ + +PK LC SP+ M S IT S
Sbjct: 833 FRSDFEIPKVLCASPLGMKSKAITDS 858
>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 410 YHFIFDKV*SLINSSTISFLSMPTALL 330
Y +++D S I TI F S PTALL
Sbjct: 128 YGYVYDITTSRITECTIEFSSSPTALL 154
>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
Length = 446
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 132 LIKSSYNSLVAFRPLCSYIFCKSFG 58
+ K+ N + AF+ + YIFC+S+G
Sbjct: 140 MFKAFVNEMPAFQTIPLYIFCESYG 164
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 44 LLAVKPKLLQKMYE-HNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKAIRK 220
LL+ + +K Y+ + ++ T + D P T + + S + I++
Sbjct: 324 LLSEENLTFKKAYDIASSMETTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSEIKE 383
Query: 221 CYECAVHHH 247
CY C +HH
Sbjct: 384 CYRCGKNHH 392
>SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 164 IMINIEKSQEKLNLKAIRKCYECAVHHHGTATKKFGQII 280
++++++K KL+L +R+ ++ VH++ K GQII
Sbjct: 473 VLVDLDK---KLSLPEMRRYWQIDVHYNDKGYTKMGQII 508
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,466
Number of Sequences: 59808
Number of extensions: 196052
Number of successful extensions: 495
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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