Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30677.Seq
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 128 3e-30
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 36 0.032
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 27 1.5
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 2.1
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 30 2.1
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051) 28 6.5
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 28 8.5
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 128 bits (310), Expect = 3e-30
Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Frame = +1
Query: 253 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 432
+ RIIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+
Sbjct: 59 KARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQ 118
Query: 433 AIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVCW--LAWRVAQVSVVAPMVTS*KA 606
I+NKKRS RK AR+ AKV + G + ++ R Q + +
Sbjct: 119 EILNKKRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYIL--EG 176
Query: 607 KNFEFYLRKIKSKRAK 654
K EFY++K+K+++AK
Sbjct: 177 KELEFYIKKLKARKAK 192
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = +2
Query: 89 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRK 59
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 262 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 378
I+ V+++ +N E + +VK +IV VD PF W++ +
Sbjct: 75 ILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 149 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSE-CSTRKPVSLMLCIMHLTMN 298
P++I ++ GG+TK +ALR++ G ++ S+ P+ L +MH N
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPI---LSVMHSFAN 84
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.1 bits (57), Expect(2) = 1.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 501 LSKTLPCQVFSCCLLTSLLVD 439
+ K+LP + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543
Score = 21.8 bits (44), Expect(2) = 1.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 624 IELEVLCLLRCN 589
+ LE LCL RCN
Sbjct: 509 LRLESLCLRRCN 520
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Frame = -3
Query: 377 CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSMIRVCELNIPIPKRSYRCPDA 204
C Y C V +TT +A + ++++ S + A+ R C N
Sbjct: 700 CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759
Query: 203 AHGT*YFHHVNERSGFAEGRAWCLQRDALTHTSSSC 96
HG + + A G+ WC + TH + C
Sbjct: 760 YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKC 795
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 521 AIPHRAFAGLRGESPRSVWSRR 586
A PH A +G+R SPR +W R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 521 AIPHRAFAGLRGESPRSVWSRRWL 592
A PH A +G+R PRS+W R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 521 AIPHRAFAGLRGESPRSVWSRRWL 592
A PH A +G+R PRS+W R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 521 AIPHRAFAGLRGESPRSVWSRR 586
A PH A +G+R PRS+W R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253
>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
Length = 387
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 273 NINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 160
++ D +RV+H + EK +S + F PR +T W
Sbjct: 114 SLRDFSIRVKHRNRMEKSTLSEFLETRVCFTPRRKTLW 151
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 355 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEV 510
F Q H+ +KKG + + A+ +R + A++ L+ Q A+VE+
Sbjct: 930 FDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQARVEI 981
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,108,915
Number of Sequences: 59808
Number of extensions: 448920
Number of successful extensions: 1279
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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