Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30677.Seq
(709 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 168 1e-41
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 168 1e-41
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 168 1e-41
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 168 1e-41
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 160 4e-39
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 72 2e-12
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 30 9.3
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 168 bits (409), Expect = 1e-41
Identities = 103/217 (47%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG--VC 543
ESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG +
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 544 WLAWRVAQVSVVAPMVTS*KAKNFEFYLRKIKSKRAK 654
+A R Q V + K EFYLRKIK+++ K
Sbjct: 174 CIASRPGQCGRADGYVL--EGKELEFYLRKIKARKGK 208
Score = 112 bits (270), Expect = 1e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 168 bits (409), Expect = 1e-41
Identities = 103/217 (47%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG--VC 543
ESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG +
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 544 WLAWRVAQVSVVAPMVTS*KAKNFEFYLRKIKSKRAK 654
+A R Q V + K EFYLRKIK+++ K
Sbjct: 174 CIASRPGQCGRADGYVL--EGKELEFYLRKIKARKGK 208
Score = 112 bits (270), Expect = 1e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 168 bits (409), Expect = 1e-41
Identities = 103/217 (47%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG--VC 543
ESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG +
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 544 WLAWRVAQVSVVAPMVTS*KAKNFEFYLRKIKSKRAK 654
+A R Q V + K EFYLRKIK+++ K
Sbjct: 174 CIASRPGQCGRADGYVL--EGKELEFYLRKIKARKGK 208
Score = 112 bits (270), Expect = 1e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 168 bits (409), Expect = 1e-41
Identities = 103/217 (47%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG--VC 543
ESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG +
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 544 WLAWRVAQVSVVAPMVTS*KAKNFEFYLRKIKSKRAK 654
+A R Q V + K EFYLRKIK+++ K
Sbjct: 174 CIASRPGQCGRADGYVL--EGKELEFYLRKIKARKGK 208
Score = 112 bits (270), Expect = 1e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 160 bits (389), Expect = 4e-39
Identities = 99/211 (46%), Positives = 126/211 (59%), Gaps = 3/211 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + RP+AN
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANT-------------KIG 39
Query: 211 GHR*LLLGI-GMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 387
R + + G +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 40 PRRIHTVRVRGGCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 99
Query: 388 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG--VCWLAWRV 561
PLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG + +A R
Sbjct: 100 PLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRP 159
Query: 562 AQVSVVAPMVTS*KAKNFEFYLRKIKSKRAK 654
Q V + K EFYLRKIK+++ K
Sbjct: 160 GQCGRADGYVL--EGKELEFYLRKIKARKGK 188
Score = 67.7 bits (158), Expect = 4e-11
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 193
GKR P KKRKYELGRPAANT++GP+RIH+VR RGG T+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 71.7 bits (168), Expect = 2e-12
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*G*GALEEQFHTGRLLACVASRPGQCGRADGYILEGKELRVLSK 629
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+LEGKEL +
Sbjct: 18 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLR 72
Query: 630 KDQV*EGE 653
K + +G+
Sbjct: 73 KIKARKGK 80
Score = 52.0 bits (119), Expect = 2e-06
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 415 LTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG--VCWLAWRVAQVSVVAPM 588
LT EE I+NKKRS+K +KY R++ AK+ L + QG + +A R Q
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 589 VTS*KAKNFEFYLRKIKSKRAK 654
V + K EFYLRKIK+++ K
Sbjct: 61 VL--EGKELEFYLRKIKARKGK 80
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.9 bits (64), Expect = 9.3
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -2
Query: 252 RVEHSDPQEKLPVSRRSARYLVFPPRERTE----WIR*GPSLVFAAGRPNSYFLFLRMGA 85
R E PQ+ + V RS R L PPR RT+ W S AG + LR G
Sbjct: 414 RCELRSPQQPVSVPGRSPRALWRPPRRRTQTPVAWCSCSASTAPLAG------VRLRAGL 467
Query: 84 RFPAGGP 64
PAG P
Sbjct: 468 PAPAGAP 474
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,762,237
Number of Sequences: 237096
Number of extensions: 2218772
Number of successful extensions: 5411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5396
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -