Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30676.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    28   1.5  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   7.9  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   7.9  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   7.9  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   7.9  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  

>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 552 INRCIAKQKFQRMISRGEWYPIWESVLIPVPK 457
           ++ CI K+ +++M+SR   YP +   ++P+P+
Sbjct: 137 LSACIPKEIYEKMLSRARMYPYF---VLPLPR 165


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 139 TGLRRCIKNLAAYILIKFPSIPQSKNKLYL 50
           + +  CI+NL  +I+   PS+P +  K Y+
Sbjct: 236 SSINECIENLEYFIVTDQPSVPPATEKDYV 265


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 503 PREIILWNFCLAMHLFIYLTRAWSV 577
           PR  +   +CLA+ L IYL   W +
Sbjct: 34  PRLSLTVKYCLAVKLLIYLLYCWYI 58


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +3

Query: 57  NLFFDCGMLGNL----INMYAAKFLIHRRSPVFLLNRVSITTKKKVHDPSEEELLPIFQY 224
           NL F C  LGNL    +N+ A  +  +  S       +S      V   S++ L+ ++ Y
Sbjct: 105 NLIFTCSPLGNLNVWDVNLEALLYDFNEHSRAVHKLDISSFHPSYVLTASQDGLIKLWDY 164

Query: 225 PISKST 242
             S ST
Sbjct: 165 KESSST 170


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 503 PREIILWNFCLAMHLFIYLTRAWSV 577
           PR  +   +CLA+ L IYL   W +
Sbjct: 34  PRLSLTVKYCLAVKLLIYLLYCWYI 58


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 503 PREIILWNFCLAMHLFIYLTRAWSV 577
           PR  +   +CLA+ L IYL   W +
Sbjct: 34  PRLSLTVKYCLAVKLLIYLLYCWYI 58


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 503 PREIILWNFCLAMHLFIYLTRAWSV 577
           PR  +   +CLA+ L IYL   W +
Sbjct: 34  PRLSLTVKYCLAVKLLIYLLYCWYI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,782
Number of Sequences: 5004
Number of extensions: 61626
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)