Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30676.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    33   0.20 
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    30   1.4  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    30   1.8  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    27   9.8  
AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    27   9.8  

>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLGN 654
           L C++  +A GRAHT++LTD   V   G+
Sbjct: 878 LICKVTQIACGRAHTVVLTDTGRVLVCGS 906


>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNGIWSVRXESK 687
           +I  ++AGR+HT+ +TD   V+  G+N    +  ESK
Sbjct: 95  KIIQISAGRSHTVSVTDDGRVFAWGSNEHGQLGMESK 131


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 514 HPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           HP  ++LS  P  +   S+ C       G  HT++L     V+T G+N
Sbjct: 754 HPSRVILSQGPHDVKVSSVSC-------GNFHTVLLASDRRVFTFGSN 794


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 514 HPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           HP  ++LS  P  +   S+ C       G  HT++L     V+T G+N
Sbjct: 754 HPSRVILSQGPHDVKVSSVSC-------GNFHTVLLASDRRVFTFGSN 794


>Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDN 148



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDN 148



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNN 657
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDN 148



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical
           protein K07C10.1 protein.
          Length = 851

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
 Frame = +1

Query: 424 SLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYIPYKS--------LECE 579
           SL   +  ++  R + Q +  NWI +   NHP  +L S   + IP  S        +EC+
Sbjct: 3   SLLLPYHPSEMLRQQRQIQM-NWISYYLGNHPRCVLFSVFCVLIPLLSYFVIYPLEIECD 61

Query: 580 IKAVAAGR-AHTI-ILTDKEGVYTLGNNG--IWSVRXESK 687
           I+   A +  H +  LT     Y +   G  IW V   +K
Sbjct: 62  IRRGFANKHGHAVEELTKFSNFYNISVGGLEIWGVLARNK 101


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 600 SRCHCFNLTLQALVRYINRCIAKQKFQRMISRGEWYPIWESVLIPVPKTL--CCSEVFIE 427
           +R +  +L +Q++VR +NR     +F   I   EWYP       P P  L  C   V I 
Sbjct: 699 ARKNSSSLPVQSVVRKMNRQAPNAQFWNDIPHDEWYP-------PTPLDLLECLLNVSIS 751

Query: 426 ATVKP*PQAMFVISNLSAKED 364
            ++K      +VI  +S   +
Sbjct: 752 ESIKRELVVQYVIDWISTSPE 772


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 391 NKHSLWLRFHSSLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYI 555
           N  S+W    ++L +++     F    +YR  N I + T  +P   L++YA IY+
Sbjct: 11  NLSSIWYTILTTLLQSYLLYLGFE---RYRLYNEIKWPTGGYPYGYLMAYATIYL 62


>Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical
          protein T04B2.8 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 24 FALNTLDYYRYNLFFDCGMLGNLI 95
          F L  L+ + +NL F CG LG L+
Sbjct: 6  FGLEALNTFYFNLVFLCGFLGYLV 29


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 358 WMPNQFEVVFVTFFPFLATWEVDT---QSTCLSKSPHMTRLSVLLLIGYW 218
           W P  + ++  T  PF A W  DT    S  +++      ++V++   YW
Sbjct: 63  WNPYLYGMINTTILPFDAIWLPDTYLYNSVVMNREETERYINVVVTTNYW 112


>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 553 IPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           IP       IK VA  + HT++LT+   ++  G+N
Sbjct: 460 IPDLPSRISIKQVALSKTHTMVLTNDNELFGFGDN 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,249
Number of Sequences: 27780
Number of extensions: 341611
Number of successful extensions: 1015
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)