Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30676.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 33 0.18
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 33 0.18
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 31 0.73
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr... 30 1.3
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 29 2.2
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 29 2.2
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR... 29 3.0
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 29 3.0
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 29 3.9
At1g30930.1 68414.m03786 F-box family protein contains F-box dom... 29 3.9
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 28 5.2
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 28 5.2
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy... 28 5.2
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNN 657
+KAVAA + HT+I T+ VYT G+N
Sbjct: 247 VKAVAAAKHHTVIATEGGDVYTWGSN 272
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
SL+ +I AV+A HT +++D V+T G N
Sbjct: 293 SLKAKIVAVSAANKHTAVVSDCGEVFTWGCN 323
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNN 657
+KAVAA + HT+I T+ VYT G+N
Sbjct: 244 VKAVAAAKHHTVIATEGGDVYTWGSN 269
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
SL+ +I AV+A HT +++D V+T G N
Sbjct: 290 SLKAKIVAVSAANKHTAVVSDCGEVFTWGCN 320
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
W P S IT +ACG T+ +E +VF TG+N Q+G
Sbjct: 71 WTPAVCSALSDHSITAVACGGAHTLF---LTETRRVFATGLNDCGQLG 115
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNN 657
I AVA G AHT+ LT+ V+ G N
Sbjct: 84 ITAVACGGAHTLFLTETRRVFATGLN 109
>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
protein kinase family protein contains similarity to
light repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
PF00069: Protein kinase domain and PF00560: Leucine Rich
Repeat
Length = 929
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 285 WVSTSHVARKGKKVTKTTSNWFGIQ 359
WVS S + ++GK VT +NW +Q
Sbjct: 46 WVSDSEIIKQGKPVTLANTNWNSMQ 70
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
W PM E IT IACG G+ S+ +E+ KV G Q+G S R
Sbjct: 234 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 283
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
W PM E IT IACG G+ S+ +E+ KV G Q+G S R
Sbjct: 303 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 352
>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 992
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 440 SEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFI 553
SEQ + G ++D ++ +H + + W FC H F+
Sbjct: 950 SEQVSEYEDGYHSDRRLEFHEQKSLPGWGFCGIFHGFL 987
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRE 511
++TN+ACG FTV + ++E + G+ Q+G+ + E
Sbjct: 168 EVTNVACGADFTV-WLSSTEGASILTAGLPQYGQLGHGTDNE 208
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 541 APIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLG 651
+P + + L +I ++AAG AHTI LT VY+ G
Sbjct: 5 SPTLLISEDLSRKIISLAAGEAHTIALTGDGCVYSWG 41
>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
Pfam:PF00646
Length = 376
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -3
Query: 627 VGQDYCVSTSRCHCFNLTLQALVR-------YINRCIAKQKFQRMISRGEWYPIWESVLI 469
V + S +RCHC + +A+ R ++ R A+ + ++ GEW W + +
Sbjct: 14 VSRSTAKSVARCHCVSKQWRAIFRRKYFIELFLTRSKARPRILFVVQDGEWSE-WSFLSL 72
Query: 468 PVPK 457
P P+
Sbjct: 73 PQPQ 76
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 174 KKVHDPSEEELLPIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKVTK 332
KK+ P++ +LP F T+ M L RQ L +++ G+ VTK
Sbjct: 512 KKIITPNKRHMLPYFVNSSLTETEFEKMIKKLHRQSLGQPELRISKAGRDVTK 564
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLG 651
+E ++ +A G H +LT K +YT G
Sbjct: 561 VEASVEEIACGSYHVAVLTSKSEIYTWG 588
>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
symporter (SUC2) nearly identical to sucrose-proton
symporter SUC2 [Arabidopsis thaliana] GI:407092
Length = 512
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 615 YCVSTSRCHCFNLTLQALVRYINRCIAKQK 526
YC + C ++TL +V +++ C K+K
Sbjct: 218 YCANLKTCFFLSITLLLIVTFVSLCYVKEK 247
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,759
Number of Sequences: 28952
Number of extensions: 312909
Number of successful extensions: 804
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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