Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30672.Seq
(748 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537439-1|CAD97681.1| 225|Homo sapiens hypothetical protein pr... 98 3e-20
BC063614-1|AAH63614.1| 225|Homo sapiens phosphoserine phosphata... 98 3e-20
AK223508-1|BAD97228.1| 225|Homo sapiens phosphoserine phosphata... 98 3e-20
Y10275-1|CAA71318.1| 225|Homo sapiens L-3-phosphoserine phospha... 98 3e-20
BT006661-1|AAP35307.1| 91|Homo sapiens phosphoserine phosphata... 42 0.003
AJ001612-1|CAA04865.1| 72|Homo sapiens L-3-phosphoserine-phosp... 42 0.003
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr... 35 0.27
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr... 35 0.27
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 34 0.47
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 34 0.62
AF016694-1|AAB71687.1| 246|Homo sapiens small intestinal mucin ... 31 3.3
AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E... 31 4.4
AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E... 31 4.4
AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion degrad... 31 4.4
>BX537439-1|CAD97681.1| 225|Homo sapiens hypothetical protein
protein.
Length = 225
Score = 98.3 bits (234), Expect = 3e-20
Identities = 47/90 (52%), Positives = 64/90 (71%)
Frame = +1
Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
V+ ++ +LF +AD VCFDVDSTVI++EGIDELAK CG D V +T AMGG + F+ A
Sbjct: 2 VSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61
Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
L +RL +I+P+ Q++ I + P LTPGI
Sbjct: 62 LTERLALIQPSREQVQRLIAEQPPHLTPGI 91
Score = 64.1 bits (149), Expect = 5e-10
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLKHPNYQHLSLIRLKFYFNGEYAGF 671
LV L ER V V+L+SGGFRS++E VA +L P ++ RLKFYFNGEYAGF
Sbjct: 94 LVSRLQERNVQVFLISGGFRSIVEHVASKLNIP-ATNVFANRLKFYFNGEYAGF 146
>BC063614-1|AAH63614.1| 225|Homo sapiens phosphoserine phosphatase
protein.
Length = 225
Score = 98.3 bits (234), Expect = 3e-20
Identities = 47/90 (52%), Positives = 64/90 (71%)
Frame = +1
Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
V+ ++ +LF +AD VCFDVDSTVI++EGIDELAK CG D V +T AMGG + F+ A
Sbjct: 2 VSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61
Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
L +RL +I+P+ Q++ I + P LTPGI
Sbjct: 62 LTERLALIQPSREQVQRLIAEQPPHLTPGI 91
Score = 64.1 bits (149), Expect = 5e-10
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLKHPNYQHLSLIRLKFYFNGEYAGF 671
LV L ER V V+L+SGGFRS++E VA +L P ++ RLKFYFNGEYAGF
Sbjct: 94 LVSRLQERNVQVFLISGGFRSIVEHVASKLNIP-ATNVFANRLKFYFNGEYAGF 146
>AK223508-1|BAD97228.1| 225|Homo sapiens phosphoserine phosphatase
variant protein.
Length = 225
Score = 98.3 bits (234), Expect = 3e-20
Identities = 47/90 (52%), Positives = 64/90 (71%)
Frame = +1
Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
V+ ++ +LF +AD VCFDVDSTVI++EGIDELAK CG D V +T AMGG + F+ A
Sbjct: 2 VSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61
Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
L +RL +I+P+ Q++ I + P LTPGI
Sbjct: 62 LTERLALIQPSREQVQRLIAEQPPHLTPGI 91
Score = 60.9 bits (141), Expect = 5e-09
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLKHPNYQHLSLIRLKFYFNGEYAGF 671
LV L ER V V+L+SGGFRS++E VA +L P ++ RLK YFNGEYAGF
Sbjct: 94 LVSRLQERNVQVFLISGGFRSIVEHVASKLNIP-ATNVFANRLKSYFNGEYAGF 146
>Y10275-1|CAA71318.1| 225|Homo sapiens L-3-phosphoserine
phosphatase protein.
Length = 225
Score = 97.9 bits (233), Expect = 3e-20
Identities = 46/90 (51%), Positives = 64/90 (71%)
Frame = +1
Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
++ ++ +LF +AD VCFDVDSTVI++EGIDELAK CG D V +T AMGG + F+ A
Sbjct: 2 ISHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61
Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
L +RL +I+P+ Q++ I + P LTPGI
Sbjct: 62 LTERLALIQPSREQVQRLIAEQPPHLTPGI 91
Score = 64.1 bits (149), Expect = 5e-10
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLKHPNYQHLSLIRLKFYFNGEYAGF 671
LV L ER V V+L+SGGFRS++E VA +L P ++ RLKFYFNGEYAGF
Sbjct: 94 LVSRLQERNVQVFLISGGFRSIVEHVASKLNIP-ATNVFANRLKFYFNGEYAGF 146
>BT006661-1|AAP35307.1| 91|Homo sapiens phosphoserine
phosphatase-like protein.
Length = 91
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 229 RDVAPTDCPELFRTADCVCFDVDSTVIQDEGI 324
R ++ ++ +LF +AD VCFDVDSTVI +EGI
Sbjct: 24 RMISHSELRKLFYSADAVCFDVDSTVISEEGI 55
>AJ001612-1|CAA04865.1| 72|Homo sapiens
L-3-phosphoserine-phosphatase homologue protein.
Length = 72
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 229 RDVAPTDCPELFRTADCVCFDVDSTVIQDEGI 324
R ++ ++ +LF +AD VCFDVDSTVI +EGI
Sbjct: 24 RMISHSELRKLFYSADAVCFDVDSTVISEEGI 55
>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
protein.
Length = 4262
Score = 35.1 bits (77), Expect = 0.27
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
PP A S+ TS+P + +SMP S TV S+ T S ++ V S+ S+P
Sbjct: 3263 PPTAEGTSMPTSTPSEGSTPLTSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSP 3322
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS +S P
Sbjct: 3323 PIADGTSMPTSTYSEGSTP 3341
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSV-GATSR*ST 219
LP A A S+LTS+ + ++MP S + V S+ T S + +S V A+ S+
Sbjct: 374 LPTTAEATSMLTSTLSEGSTPLTNMPVSTILVASSEASTTSTIPVDSKTFVTTASEASSS 433
Query: 218 PVRASSTS 195
P A TS
Sbjct: 434 PTTAEDTS 441
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
P + S+ TS+P + +SMP S M V ++ T SA ++ S +T S+P
Sbjct: 2202 PTTSEGTSMPTSTPSEGSTPFTSMPVSTMPVVTSEASTLSATPVDTSTPVTTSTEATSSP 2261
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS S P
Sbjct: 2262 TTAEGTSIPTSTLSEGTTP 2280
Score = 30.7 bits (66), Expect = 5.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
P + S+ TS+P + +SMP S V S+ +T SA ++ S +T S+P
Sbjct: 906 PTTSEGTSMPTSTPGEGSTPLTSMPDSTTPVVSSEARTLSATPVDTSTPVTTSTEATSSP 965
Query: 215 VRASSTS 195
A TS
Sbjct: 966 TTAEGTS 972
Score = 30.3 bits (65), Expect = 7.7
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
P A S+ TS+P +S+P S TV S+ T S L ++ V S+ S+P
Sbjct: 1908 PTTADGSSMPTSTPREGRPPLTSIPVSTTTVASSEINTLSTTLADTRTPVTTYSQASSSP 1967
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS +S P
Sbjct: 1968 TTADGTSMPTPAYSEGSTP 1986
>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
protein.
Length = 4493
Score = 35.1 bits (77), Expect = 0.27
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
PP A S+ TS+P + +SMP S TV S+ T S ++ V S+ S+P
Sbjct: 3263 PPTAEGTSMPTSTPSEGSTPLTSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSP 3322
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS +S P
Sbjct: 3323 PIADGTSMPTSTYSEGSTP 3341
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSV-GATSR*ST 219
LP A A S+LTS+ + ++MP S + V S+ T S + +S V A+ S+
Sbjct: 374 LPTTAEATSMLTSTLSEGSTPLTNMPVSTILVASSEASTTSTIPVDSKTFVTTASEASSS 433
Query: 218 PVRASSTS 195
P A TS
Sbjct: 434 PTTAEDTS 441
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
P + S+ TS+P + +SMP S M V ++ T SA ++ S +T S+P
Sbjct: 2202 PTTSEGTSMPTSTPSEGSTPFTSMPVSTMPVVTSEASTLSATPVDTSTPVTTSTEATSSP 2261
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS S P
Sbjct: 2262 TTAEGTSIPTSTLSEGTTP 2280
Score = 30.7 bits (66), Expect = 5.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
P + S+ TS+P + +SMP S V S+ +T SA ++ S +T S+P
Sbjct: 906 PTTSEGTSMPTSTPGEGSTPLTSMPDSTTPVVSSEARTLSATPVDTSTPVTTSTEATSSP 965
Query: 215 VRASSTS 195
A TS
Sbjct: 966 TTAEGTS 972
Score = 30.3 bits (65), Expect = 7.7
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
P A S+ TS+P +S+P S TV S+ T S L ++ V S+ S+P
Sbjct: 1908 PTTADGSSMPTSTPREGRPPLTSIPVSTTTVASSEINTLSTTLADTRTPVTTYSQASSSP 1967
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS +S P
Sbjct: 1968 TTADGTSMPTPAYSEGSTP 1986
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 34.3 bits (75), Expect = 0.47
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = -3
Query: 362 TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAG 183
TSSP + +SSS PSS + S+S + S+ ++S S ++S S+P +SS+S ++
Sbjct: 89 TSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSS--SSP-SSSSSSSSSS 145
Query: 182 CFSNCKEPS 156
S+ PS
Sbjct: 146 PSSSSSSPS 154
Score = 33.5 bits (73), Expect = 0.82
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = -3
Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
+S+ S SS P + SSS PSS + S S + S+ + S + ++S S+P +S
Sbjct: 62 SSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSP-SSS 120
Query: 203 STSRTAGCFSNCKEPS 156
S+S ++ S+ PS
Sbjct: 121 SSSSSSSPSSSSSSPS 136
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = -3
Query: 380 SAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASS 201
S+ S +SSP + +SSS PSS + S+S + S+ ++S S ++S S+ +SS
Sbjct: 108 SSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS--SSSSSSSS 165
Query: 200 TSRTAGCFSNCKEPS 156
+ ++ S+ PS
Sbjct: 166 SPSSSSPSSSGSSPS 180
Score = 31.1 bits (67), Expect = 4.4
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = -3
Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
+S+ S +SSP N +SSS SS + S+S + S+ ++S S ++S S+P +S
Sbjct: 93 SSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSS--SSSSPSSSSSSSSSSPSSSS 150
Query: 203 STSRTAGCFSNCKEPS 156
S+ ++ S+ S
Sbjct: 151 SSPSSSSSSSSSSSSS 166
Score = 30.3 bits (65), Expect = 7.7
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -3
Query: 371 SLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSR 192
S + SS P + +SSS PSS + S S + S+ +S S + S S+ +S +S
Sbjct: 48 SSILSSSIPSSSSSSSSPSSSHSSSSPS-SSHSSSSPSSSSSTSSPSSSSSSSSSSPSSS 106
Query: 191 TAGCFSNCKEPS 156
+ S+ PS
Sbjct: 107 NSSSSSSSSSPS 118
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 33.9 bits (74), Expect = 0.62
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -3
Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
+S+ S SS P + SSS PSS + S S + S+ ++ S ++S S+ +S
Sbjct: 62 SSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSS 121
Query: 203 STSRTAGCFSNCKEPS 156
S+S ++ S+ PS
Sbjct: 122 SSSSSSSPSSSSSSPS 137
Score = 33.1 bits (72), Expect = 1.1
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = -3
Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVR 210
P +S+ S +SSP N +SSS SS + S+S + S+ ++S S ++S S+P
Sbjct: 92 PSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSS--SSSSPSSSSSSSSSSPSS 149
Query: 209 ASSTSRTAGCFSNCKEPS 156
+SS+ ++ S+ S
Sbjct: 150 SSSSPSSSSSSSSSSSSS 167
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -3
Query: 371 SLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSR 192
S + SS P + +SSS PSS + S S S+ ++S + +S S+ +S +S
Sbjct: 48 SSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSS 107
Query: 191 TAGCFSNCKEPS 156
+ S+ PS
Sbjct: 108 NSSSSSSSSSPS 119
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = -3
Query: 380 SAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASS 201
S+ S +SSP + +SSS PSS + S+S + S+ ++S S ++S S+ +SS
Sbjct: 109 SSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS--SSSSSSSS 166
Query: 200 TSRTAGCFSNCKEPS 156
+ ++ S+ PS
Sbjct: 167 SPSSSSPSSSGSSPS 181
Score = 30.3 bits (65), Expect = 7.7
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -3
Query: 383 ASAVSLLTSSPFPQNLASSSMPSS--CMTVESTSKQTQSAVLNNSGQSVGATSR*STPVR 210
+S S +SS P + SSS PSS + S+S T S ++S S + S ++
Sbjct: 53 SSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSS 112
Query: 209 ASSTSRTAGCFSNCKEPS 156
+SS+S ++ S+ PS
Sbjct: 113 SSSSSPSSSSSSSSSSPS 130
Score = 30.3 bits (65), Expect = 7.7
Identities = 30/106 (28%), Positives = 50/106 (47%)
Frame = -3
Query: 473 SMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES 294
S +S P+ SS +S N +S+ S +SS +SSS PSS + S
Sbjct: 85 SSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSS 144
Query: 293 TSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAGCFSNCKEPS 156
+S + S+ ++S S ++S S+P +S +S + S+ PS
Sbjct: 145 SSPSSSSSSPSSSSSSSSSSS--SSPSSSSPSSSGSSPSSSNSSPS 188
>AF016694-1|AAB71687.1| 246|Homo sapiens small intestinal mucin
MUC3 protein.
Length = 246
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -3
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
PP A S+ TS+P + + MP S V S+ T S ++ V S+ S+P
Sbjct: 22 PPTAEGTSMPTSTPSEGSTPLTRMPVSTTMVASSETSTLSTTPADTSTPVTTYSQASSSP 81
Query: 215 VRASSTSRTAGCFSNCKEP 159
A TS +S P
Sbjct: 82 TTADGTSMPTSTYSEGGTP 100
>AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1302
Score = 31.1 bits (67), Expect = 4.4
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -3
Query: 407 WNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR 228
+ V P +S VS+L+SSP P LASS + S+ ++ S S ATSR
Sbjct: 333 YTVTHPWASSGVSILSSSPSPPALASS---PQAVPASSSRQRPSSTGPPLPPASPSATSR 389
Query: 227 *STPVRASSTSRTAGCFSN 171
+ +R S + +G SN
Sbjct: 390 RPSSLRISPSLGASGGASN 408
>AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1302
Score = 31.1 bits (67), Expect = 4.4
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -3
Query: 407 WNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR 228
+ V P +S VS+L+SSP P LASS + S+ ++ S S ATSR
Sbjct: 333 YTVTHPWASSGVSILSSSPSPPALASS---PQAVPASSSRQRPSSTGPPLPPASPSATSR 389
Query: 227 *STPVRASSTSRTAGCFSN 171
+ +R S + +G SN
Sbjct: 390 RPSSLRISPSLGASGGASN 408
>AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion
degradation protein 2 protein.
Length = 1302
Score = 31.1 bits (67), Expect = 4.4
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -3
Query: 407 WNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR 228
+ V P +S VS+L+SSP P LASS + S+ ++ S S ATSR
Sbjct: 333 YTVTHPWASSGVSILSSSPSPPALASS---PQAVPASSSRQRPSSTGPPLPPASPSATSR 389
Query: 227 *STPVRASSTSRTAGCFSN 171
+ +R S + +G SN
Sbjct: 390 RPSSLRISPSLGASGGASN 408
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,267,354
Number of Sequences: 237096
Number of extensions: 2011760
Number of successful extensions: 4609
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4563
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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