Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30671.Seq
         (298 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   0.52 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   1.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   1.2  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   1.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   1.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   3.7  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   4.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   6.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   6.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   6.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   6.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   6.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   6.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    19   8.5  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 206 ESLLVVAASDTKYIALPF-IA*LISLYFGANALFVKDTKLVLVHHFEQ 66
           ++L VVA + TK   LPF +  +I + F     FV  T+++ V ++EQ
Sbjct: 97  QNLKVVATTKTKAWFLPFVVTNIIFVLFHTYEAFVW-TRIMGVAYYEQ 143


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 79  TTSNNFWHPVAGYETFNFMTAVNP 8
           +TSNN WH   G  + N     NP
Sbjct: 370 STSNNRWHNNNGNNSNNHWRKNNP 393


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 185 RQRQARIPDETWRPDKQPCSSSDAKG 262
           RQ+++  P  TW+   Q C     KG
Sbjct: 47  RQKKSHPPQWTWQCINQRCERRHIKG 72


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRI 101
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRI 101
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 284 GAVCNMSGPLHQKTNTAVCQDAMFH 210
           G+  +MSG +HQ  N +    ++ H
Sbjct: 196 GSWLDMSGGMHQMANYSTDYSSLTH 220


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 230 KQPCSSSDAKGHSCYR 277
           +Q     ++KG SCYR
Sbjct: 302 RQMYDRGESKGSSCYR 317


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 177 HEVHSPSIHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGI 55
           H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 90  HSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 177 HEVHSPSIHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGI 55
           H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 90  HSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 290 HRGAVCNMSGPLHQKTN 240
           H+GAVC++    +Q  N
Sbjct: 133 HQGAVCHLETRPNQSDN 149


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 20  SHEVKRFVPG 49
           +HE+K+ +PG
Sbjct: 769 NHEIKKVIPG 778


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +2

Query: 2   FDGIDRSHEVKRFVPGNGMPEVVRSGGRAQASYLLRKAH 118
           F    R H +      N  P V R  G++ A     K H
Sbjct: 230 FSSPRRRHSINLLEEDNQKPNVCRICGKSYARPSTLKTH 268


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 177 HEVHSPSIHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGI 55
           H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 90  HSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -2

Query: 177 HEVHSPSIHRLTDQPLL 127
           H  H P IH     P+L
Sbjct: 90  HSHHGPPIHHQIRPPIL 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,886
Number of Sequences: 336
Number of extensions: 1313
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)