Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30671.Seq
(298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 103 4e-24
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 103 4e-24
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 2.4
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 24 4.2
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 24 5.5
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 7.3
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 23 7.3
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 23 7.3
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 23 9.6
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 9.6
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 9.6
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 23 9.6
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 23 9.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 23 9.6
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 103 bits (248), Expect = 4e-24
Identities = 49/82 (59%), Positives = 60/82 (73%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKR+G EV D +G E+ GYV ++ GNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQRATH 269
FPM GVL RVRLL+ RA H
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGH 81
Score = 33.5 bits (73), Expect = 0.007
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 260 GHSCYRPRRDGER 298
GH CYRPRRDGER
Sbjct: 80 GHPCYRPRRDGER 92
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 103 bits (248), Expect = 4e-24
Identities = 49/82 (59%), Positives = 60/82 (73%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKR+G EV D +G E+ GYV ++ GNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQRATH 269
FPM GVL RVRLL+ RA H
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGH 81
Score = 33.5 bits (73), Expect = 0.007
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 260 GHSCYRPRRDGER 298
GH CYRPRRDGER
Sbjct: 80 GHPCYRPRRDGER 92
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 44 PGNGMPEVVRSGGRAQASYLLR 109
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 20 SHEVKRFVPGNGMPEV 67
SH ++R++P N PEV
Sbjct: 553 SHHLQRYIPKNWFPEV 568
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 93 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSN 1
A PP T S IP GT+ L + P N
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQN 397
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 3 STGLTAVMKLNVSYPATGCQKLFE 74
S+ T V+K N YP T C K E
Sbjct: 59 SSNSTFVVKCNRQYPCTRCLKYGE 82
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 111 KRIGAEVEADQLGDEWKGYVLRVACGNDKQGFPMKHGVL 227
KR+ + +L DE + VA D FP + G L
Sbjct: 254 KRLSRFFKRRELADELGAIAVNVALSRDVTKFPKQDGTL 292
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 141 QLGDEWKGYVLRVACGNDKQGFPMKH 218
Q D WKG ++ ++ FP KH
Sbjct: 395 QTSDFWKGPHFQIGAIDNSLAFPYKH 420
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 84 EHKLRIFYEKRIGAEVEADQLGDEWKG 164
EHK + FYEK +G W+G
Sbjct: 53 EHKGKPFYEKLVGFMASGPVCAMIWEG 79
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 60 QKLFEVVDEHKLRIFYE 110
Q +FE+++ H +IF+E
Sbjct: 1225 QTIFEMIESHLSKIFFE 1241
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 94 SLCSSTTSNNFWHPVAGYETF 32
+LC++TTS++ + +A Y +
Sbjct: 279 ALCNATTSSSLFRQIASYGVY 299
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 76 TSNNFWHPVAGYE 38
T++ FWHP YE
Sbjct: 258 TTHLFWHPYGSYE 270
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 87 ARPPLRTTSGIPLPGTKRLT 28
+RP R + GIP+PG + T
Sbjct: 231 SRPKQRLSWGIPVPGNSQQT 250
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 23.0 bits (47), Expect = 9.6
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 251 QKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA*LISLYF--GANALFVKDTKLVLVH 78
QK N C L V+ + + P + L+ L+ GAN++ ++V +
Sbjct: 911 QKFNNETCYMICSIERLLKVIFYRIHEILLDPKLGQLLLLFESDGANSVTTPREQMVYRN 970
Query: 77 HFEQLLASRCRVRNV 33
H E +LA ++ N+
Sbjct: 971 HVESILAPESKIFNM 985
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,846
Number of Sequences: 5004
Number of extensions: 22254
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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