Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30671.Seq
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 110 2e-25
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 107 2e-24
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 29 0.65
07_03_0849 + 21997758-21998423 28 1.5
07_01_0155 + 1102819-1104009,1104071-1104097 28 1.5
06_01_0488 + 3467962-3468018,3468366-3468788 28 1.5
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 2.0
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 2.6
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 27 3.5
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 27 3.5
07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432 27 3.5
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 26 4.6
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 26 6.0
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549... 26 6.0
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 25 8.0
11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422... 25 8.0
08_01_0917 + 9033451-9036136,9036373-9036722 25 8.0
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 25 8.0
03_02_0411 + 8217324-8218172 25 8.0
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 110 bits (264), Expect = 2e-25
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KRI EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQRAT 266
FPMK GVLT+ RVRLL+ R T
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT 81
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 107 bits (257), Expect = 2e-24
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KRI EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQRAT 266
FPMK GVLT RVRLL+ R T
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT 81
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 258 FASEDEHGCLSGRHVSSGILACRCRKRHEVHSPSIHR-LTDQPLLRRQCAFR 106
FA E EHG + R + + A + H P I R + +Q + +C R
Sbjct: 399 FAQELEHGQIKRRFIKRLVDALNANMKQNAHCPGIRRVILEQSIYMMECNSR 450
>07_03_0849 + 21997758-21998423
Length = 221
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 270 HEWPFASEDEHGCLSGRHVSSGILACRCRK 181
H+WP ++ D+ + V G LA C+K
Sbjct: 192 HDWPSSATDQETTTKRKVVKEGFLARNCKK 221
>07_01_0155 + 1102819-1104009,1104071-1104097
Length = 405
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 231 LSGRHVSSGILACRCRKRHEVHSPSIHRLTDQPLLRRQCAFRKRYEACA 85
+S RH + + H + S +TD LLR++ F++ YE C+
Sbjct: 25 VSERHNLEKLEMAHAQLEHALERSSKLPITDVSLLRQRRMFKRAYEECS 73
>06_01_0488 + 3467962-3468018,3468366-3468788
Length = 159
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 167 CTSCRLRQRQARIPDETWRPDKQPCSSSDAKGHSCYR 277
C C L QR+A ++PD+ P + A ++C+R
Sbjct: 12 CWPCPLAQRRADGAFCVFKPDQSPAAMQKAIDYACWR 48
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRIGAEVEADQLG 149
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 113 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 9
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 78 VDEHKLRIFYEKRIGAEVEADQLGDEWKGYVL 173
++ + +RIF + + E + D + EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 167 CTSCRLRQRQARIPDETWRPDKQPCSSS 250
C+SCR + R+ R D W+ + PC +S
Sbjct: 267 CSSCRNKLRRPRAQDWEWK--RSPCLAS 292
>07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432
Length = 996
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 258 FASEDEHGCLSGRHVSSGILACRCRKRHEVHSPSIHR-LTDQPLLRRQC 115
FA E +HG + R V + A + H P I R + +Q + +C
Sbjct: 881 FAQELDHGHIRQRFVKRLVDALNANMKPSAHCPGIRRVILEQSIYMMEC 929
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 108 RKRYEACARPPLRTTSGIPLPGTKRL 31
R R RPP R++S +PLP R+
Sbjct: 251 RPRLSRRPRPPRRSSSPVPLPSPHRI 276
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 134 LYFGANALFVKDTKLVLVHH-FEQLLASRCRVRN 36
LYF +A F+ DTK V H F +L R V+N
Sbjct: 27 LYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
>01_07_0327 +
42752697-42752711,42753937-42754127,42754822-42754919,
42755792-42755880
Length = 130
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 231 LSGRHVSSGILACRCRKRHEVHSPSIHRLTDQPL 130
+ G++V+S ++AC C H P D PL
Sbjct: 62 MEGQYVASWLIACYCTCSHHSTCPEETLTQDPPL 95
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 87 HKL--RIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQGFPMKHGVLTNSRVRLLMQR 260
HKL R ++ K I +EVE D +W+ Y ++ G K PM+ + T ++ Q
Sbjct: 190 HKLYKRAYHPKMI-SEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQW 245
Query: 261 ATHVT 275
AT V+
Sbjct: 246 ATLVS 250
>11_01_0534 +
4227838-4228001,4229034-4229151,4229593-4229752,
4229901-4230027,4230899-4231037,4231119-4231301,
4231395-4231464,4231550-4231662
Length = 357
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 209 DETWRPDKQPCSSSDAKGHSCYRPRRD 289
D TW PC S + H YRP ++
Sbjct: 79 DLTWLQCDAPCQSCNKVPHPLYRPTKN 105
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 135 ADQLGDEWKGYVLRVAC-GNDKQGFPMKHGVLTNSRVRLLMQRATHV 272
+DQ GDE+K VL C G+ + ++ S RL + + H+
Sbjct: 778 SDQNGDEFKALVLEFICNGSLDEWLHASTAAISTSYRRLNLMKRLHI 824
>04_04_0285 - 24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 155 MEGLCTSCRLRQRQARIPDETWRPDKQP 238
+ G C+ + +Q+QA D+T PD QP
Sbjct: 1362 LRGSCSYKKAKQKQAVQLDDTEVPDSQP 1389
>03_02_0411 + 8217324-8218172
Length = 282
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 206 PDETWRPDKQPCSSSDAKGHSCYRPR 283
P RP+ +P S D G + +RPR
Sbjct: 14 PPSRHRPNAKPASRKDGGGGASHRPR 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,790,053
Number of Sequences: 37544
Number of extensions: 174996
Number of successful extensions: 623
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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