Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30671.Seq
(298 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 73 3e-14
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.51
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 27 2.7
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0) 27 3.6
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 27 3.6
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.7
SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10) 26 4.7
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) 26 6.3
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) 26 6.3
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_45410| Best HMM Match : DUF29 (HMM E-Value=2.3) 25 8.3
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 25 8.3
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 25 8.3
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 25 8.3
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 73.3 bits (172), Expect = 3e-14
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +3
Query: 126 EVEADQLGDEWKGYVLRVACGNDKQGFPMKHGVLTNSRVRLLMQR 260
EV + LGDEWKGYV R+ GNDKQGFPMK G++TN RVRLL+ +
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46
Score = 35.1 bits (77), Expect = 0.010
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 254 AKGHSCYRPRRDGER 298
+KGHSCYRPRR GER
Sbjct: 45 SKGHSCYRPRRTGER 59
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 258 FASEDEHGCLSGRHVSSGILACRCRKRHEVHSPSIHRL 145
F+S DE+ H+ +G++ CR EVH I R+
Sbjct: 1033 FSSNDEYARYVRDHIQTGMMVRCCRTYEEVHEGDIGRV 1070
>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 102 FYEKRIGAEVEADQLGDEWKGYVL-RVACGNDKQG 203
FY K++ ++ L +EW+ +V +A G DK G
Sbjct: 10 FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 153 HRLTDQPLLRRQCAFRKRYEACARPPLRTTSGIPLP 46
H ++ + L RR A R+ ACAR P ++ P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733
>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 934
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 164 LCTSCRLRQRQARIPDE-TWRPDKQPCSSSDAKGH 265
L + RLRQ + DE W +K+P +SS GH
Sbjct: 703 LADAARLRQFLHDVEDEEVWIREKEPIASSTNTGH 737
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 203 IPDETWRPDKQPCSSSDAKGHSCYRPRRDGE 295
+ ++ +P KQ +S A GH+ Y P +DGE
Sbjct: 142 VQEKARKPTKQ--ASGVAHGHTYYEPLKDGE 170
>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 132 LLRRQCAFRKRYEACARPPLRTTSGIPLP 46
L RR A R+ +ACAR P ++ P+P
Sbjct: 596 LSRRSLASRRDAKACARAPKMPSAHTPVP 624
>SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)
Length = 1292
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = -2
Query: 228 SGRHVSSGILACRCRKRHEVHSPSIHRLTDQPLLRRQCAFRKRYEACAR-PPLRTTSGIP 52
S HV+ + RC + LT + L QCA R Y CA+ P G
Sbjct: 739 STTHVAQKLNFSRCANAQLLTCAKAQLLTVRKGLITQCAQRLYYTRCAKAQPPTVRKGST 798
Query: 51 LPGTKRL 31
G +RL
Sbjct: 799 THGAQRL 805
>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
Length = 740
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 132 LLRRQCAFRKRYEACARPPLRTTSGIPLP 46
L RR A R+ ACAR P ++ P+P
Sbjct: 491 LSRRSLASRRDARACARAPKMPSAHTPVP 519
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 161 GLCTSCRLRQRQARIPDETW-RPDKQPCSSSDAKG 262
G+ CR R+ R D+TW PD+ P S G
Sbjct: 1728 GIDRECRSIDRECRCIDDTWNNPDEFPRSFIKGSG 1762
>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
Length = 671
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 132 LLRRQCAFRKRYEACARPPLRTTSGIPLP 46
L RR A R+ ACAR P ++ P+P
Sbjct: 410 LSRRSLASRRDARACARAPKMPSAHTPVP 438
>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 37 FRTRQRDARSCSKWW 81
F R+R R CS+WW
Sbjct: 636 FGWRRRPKRDCSRWW 650
>SB_45410| Best HMM Match : DUF29 (HMM E-Value=2.3)
Length = 175
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 156 IHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGIPLPGTKRL 31
++R+ P LR+ FR+ EA P + T+ + G KRL
Sbjct: 3 LNRVAAHPELRKDPDFRQFLEADELPRAKDTAALSGGGLKRL 44
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 161 GLCTSCRLRQRQARIPDETWRPDKQPCSSSDAKGHSCYRPRRDG 292
G+ + R IP+ W P SS++A H C R R G
Sbjct: 142 GILVCTDVMARGVDIPEVNWVIQYDPPSSANAFVHRCGRTARIG 185
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 212 ETWRPDKQPCSSSDAKGHSCYRPRRDGER 298
ETW + P S+ G+ C+R R+ R
Sbjct: 465 ETWLNESIPDSTIHMSGYLCFRKDREARR 493
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 212 ETWRPDKQPCSSSDAKGHSCYRPRRDGER 298
ETW + P S+ G+ C+R R+ R
Sbjct: 160 ETWLNESIPDSTIHMSGYLCFRKDREARR 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,543
Number of Sequences: 59808
Number of extensions: 199007
Number of successful extensions: 625
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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