Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30671.Seq
         (298 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   121   1e-28
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   1.8  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    27   3.2  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    26   4.2  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    26   5.6  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U64847-1|AAN84827.1|  358|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    25   7.4  
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    25   9.7  
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    25   9.7  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  121 bits (291), Expect = 1e-28
 Identities = 53/79 (67%), Positives = 65/79 (82%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
           M+LN +YPATG QK FEV +E KLR+F+EKR+  EV  D LGDEWKGYV+R+  GNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQR 260
           FPMK G+LTN RVRLL+++
Sbjct: 61  FPMKQGILTNGRVRLLLKK 79



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 257 KGHSCYRPRRDGER 298
           KG SCYR R++GER
Sbjct: 79  KGQSCYRERKNGER 92


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 284 GAVCNMSGPLHQKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA*LISLYFGANALF 108
           G+V N    LH  T +A     +     L+ +   ++ YIA  ++A +I  Y+G   +F
Sbjct: 80  GSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAHVIYKYYGCQVIF 138


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 174 EVHSPSIHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGIPLPGTK 37
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 174 EVHSPSIHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGIPLPGTK 37
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 174 EVHSPSIHRLTDQPLLRRQCAFRKRYEACARPPLRTTSGIPLPGTK 37
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 182 LRQRQARIPDETWRPDKQPCSSSDAKGHSCYR 277
           L Q QA+  +E W+ D + C S    G SC R
Sbjct: 425 LSQLQAQC-NEMWQSDMRACESVSMMGRSCVR 455


>Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical
           protein C40H1.3 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 218 WRPDKQPCSSSDAKGHSCYRPRRDGE 295
           W PDK P  S D K  +  +PR+  E
Sbjct: 176 WTPDKNPMPSDDWKPMTPMKPRKRAE 201


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 256  CIRRRTRLFVRTPCFIGNPCLSLPQATRST 167
            C+ R   + +    F G PCLSLP     T
Sbjct: 1064 CMGRCNNIVMECEVFNGQPCLSLPDVMSKT 1093


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 42  YPATGCQKLFEVVDEHK---LRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQGFPM 212
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++   NDK+   +
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK--QL 63

Query: 213 KHGVLTNSRVRLLMQRATHVTDRAAM 290
            + V    +V   MQ  T ++D  A+
Sbjct: 64  ANDVREAQKVLRTMQ--TRISDLKAL 87


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   STGLTAVMKLNVSYPATG-CQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRV 179
           +TG T V+K N  YP     +K+     E ++  + E+    +   D + + W   +  V
Sbjct: 604 TTGFTDVVKYNEMYPVVSEWRKIAANYSEFEVYPYTERSNFVDQTVDMVDNIWNTVISEV 663

Query: 180 AC 185
            C
Sbjct: 664 IC 665


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  CQKLFEVVDEHKLRIFYEKRI 119
           CQKL E+ DEHK +   EK +
Sbjct: 315 CQKLTELFDEHKEKYGVEKDV 335


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 126 RRQCAFRKRYEACARPPLRTTSGIPLPGT 40
           RR+C+ ++R     +PP  TT  +P   T
Sbjct: 325 RRRCSRKQRCHTTTQPPSPTTESLPTSTT 353


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  NGMPEVVRSGGRAQASYLLRK 112
           NG P+++R G +  ++YL R+
Sbjct: 891 NGRPKIIRFGSKCDSNYLKRQ 911


>U64847-1|AAN84827.1|  358|Caenorhabditis elegans Hypothetical
           protein F08F3.4 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 54  GCQKLFEVVDEHKLRIFYEKRIGA 125
           G + + +V  +HKL++F    IGA
Sbjct: 132 GVENILQVAAKHKLKVFIPSTIGA 155


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 185 RQRQARIPD-ETWRPDKQPCSSSDAKGHSCYRPRRDG 292
           R R  R PD E    +++PCSSS +  +  + P   G
Sbjct: 18  RPRGPRTPDGEPTEANERPCSSSSSLSNDSFVPAPQG 54


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  LRIFYEKRIGAEVEADQLGD 152
           +R+ YEK  G  +EAD  GD
Sbjct: 122 IRVTYEKEYGKALEADIAGD 141


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  LRIFYEKRIGAEVEADQLGD 152
           +R+ YEK  G  +EAD  GD
Sbjct: 122 IRVTYEKEYGKALEADIAGD 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,122,568
Number of Sequences: 27780
Number of extensions: 133444
Number of successful extensions: 438
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)