Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30671.Seq
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.11 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   0.80 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   4.2  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    20   5.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   5.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   5.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   7.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 201 LACRCRKRHEVHSPSIHRLTDQPLLRRQ-CAFRKRYEACARPPLRTTSGIPLPGTKRLT 28
           ++ R   RH VHS +   +  + LL+RQ C  RK          R  +  PL    ++T
Sbjct: 52  ISSRRNGRHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQIT 110


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 0.80
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 114 RIGAEVEADQLGDEWKGYV 170
           RIG  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 73  SNNFWHPVAGYETFN 29
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 128 FGANALFVKDTKLVLVHHFEQLLA 57
           F  +AL  KD+K  +VH     LA
Sbjct: 256 FATSALVSKDSKFNMVHIQNSTLA 279


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 11  IDRSHEVKRFVPGNGMP 61
           I+ +HE  +++PG+ +P
Sbjct: 55  INETHENVKYLPGHKLP 71


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 174 RVACGNDKQGFPMKHGVLTNSRVRLLMQRAT 266
           RV CG   +G+P  +  LT ++ + + ++ +
Sbjct: 107 RVRCGRSLEGYPF-NPCLTEAQYKEMEEKVS 136


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 206 PDETWRPD 229
           PD+ W+PD
Sbjct: 105 PDKVWKPD 112


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 253 IRRRTRLFVRTPCFI 209
           +R+R  LF+   CF+
Sbjct: 411 LRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 253 IRRRTRLFVRTPCFI 209
           +R+R  LF+   CF+
Sbjct: 464 LRKRKELFIAIVCFV 478


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 143 LISLYFGANALFVKDTKL 90
           L +  FGANALF    +L
Sbjct: 53  LSAFLFGANALFTPGQEL 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 94  SLCSSTTSNNFWHP 53
           S  SS+  N+FW P
Sbjct: 376 SSISSSEENDFWQP 389


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 174 RVACGNDKQGFPMKHGVLTNSRVRLLMQRAT 266
           RV CG   +G+P  +  LT ++ + + ++ +
Sbjct: 123 RVRCGRSLEGYPF-NPCLTEAQYKEMEEKVS 152


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 189 CRKRHEVHSPSI 154
           CR RHE+ S  +
Sbjct: 522 CRPRHEIRSTDV 533


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 57  CQKLFEVVDEHKLRIFYEKRIGAEVEAD 140
           CQ  F+        +  EKR G  VE D
Sbjct: 43  CQNWFDKFRSGDFSLKDEKRSGRPVEVD 70


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 177 HEVHSPSIHRLTDQPLL 127
           H V  PS H  +  PLL
Sbjct: 511 HHVAPPSGHHASSAPLL 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,980
Number of Sequences: 438
Number of extensions: 1454
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)