Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30671.Seq
(298 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 109 3e-25
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 107 2e-24
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 30 0.32
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote... 28 0.97
At1g26510.1 68414.m03231 F-box family protein contains F-box dom... 28 1.3
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 27 3.0
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 27 3.0
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ... 26 3.9
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ... 26 3.9
At1g08490.1 68414.m00940 cysteine desulfurase, putative similar ... 26 5.2
At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase, pu... 25 6.9
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 25 6.9
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 25 6.9
At3g24820.1 68416.m03114 BSD domain-containing protein contains ... 25 9.1
At3g07930.3 68416.m00970 HhH-GPD base excision DNA repair family... 25 9.1
At3g07930.2 68416.m00969 HhH-GPD base excision DNA repair family... 25 9.1
At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family... 25 9.1
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r... 25 9.1
At1g55990.1 68414.m06423 glycine-rich protein predicted proteins... 25 9.1
At1g21760.1 68414.m02724 F-box family protein Contains PF|00646 ... 25 9.1
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 109 bits (262), Expect = 3e-25
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
MK NV+ P TGCQK E+ D+ KLR FY+KRI EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQRAT 266
FPMK GVLT RVRLL+ R T
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGT 81
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 107 bits (256), Expect = 2e-24
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQG 203
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQRAT 266
FPMK GVLT RVRLL+ R T
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGT 81
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 9 GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRIGAEVEADQLGDE 155
GLT + + +KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
kinase, putative
Length = 691
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 215 TWRPDKQPCSSSDAKGHSCYRPRR 286
+W PD PCSS G +C RR
Sbjct: 46 SWTPDADPCSSGSFDGVACDGNRR 69
>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
Pfam:PF00646
Length = 686
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 219 HVSSGILACRCRKRHEVHSPSIHRLTDQPLLRRQ 118
H +SG+++ C ++ V +PS R P +RR+
Sbjct: 469 HYASGLISIGCNRKQIVTNPSTGRFITLPSVRRR 502
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 150 DEWKGYVLRVACGNDKQ 200
DEWK ++ RV CG +++
Sbjct: 1046 DEWKNFLERVKCGTEEE 1062
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
synthase 1 nearly identical to callose synthase 1
catalytic subunit [Arabidopsis thaliana] GI:13649388
Length = 1922
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 150 DEWKGYVLRVACGNDKQ 200
DEW ++ RV CGN+++
Sbjct: 1091 DEWTNFLERVKCGNEEE 1107
>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 224 DAMFHRESLLVVAASDTKYIALP 156
DAM+ R LL AA DTK ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357
>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 224 DAMFHRESLLVVAASDTKYIALP 156
DAM+ R LL AA DTK ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357
>At1g08490.1 68414.m00940 cysteine desulfurase, putative similar to
nitrogen fixation protein (nifS) GB:D64004 GI:1001701
from [Synechocystis sp]; contains TIGRFAM TIGR01364:
phosphoserine aminotransferase; contains Pfam PF00266:
aminotransferase, class V
Length = 463
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 98 TKLVLVHHFEQLLASRCRVRNV*L--HDCG 15
TKLV VHH +LAS + + + HD G
Sbjct: 214 TKLVAVHHVSNVLASSLPIEEIVVWAHDVG 243
>At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative contains
similarity to xyloglucan endotransglycosylase XET2
GI:8886867 from [Asparagus officinalis]
Length = 292
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 70 SKWWTSTSFVSFTKSAL 120
S WWTS SF T S L
Sbjct: 241 SNWWTSPSFSQLTASQL 257
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 158 EGLCTSCRLRQRQARIPDETW-RPDKQPCSSSDAKGHSCYRP 280
E L T+CR + +I W RPD QP SSS+A + +P
Sbjct: 499 ESLITACR--EGHLKI----WTRPDTQPSSSSEATNPTTSKP 534
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 45 PATGCQKLFEVVDEHKLRIFYEKRIGAEVEADQLGDEWKGYVLRVACGNDKQGFPM 212
P CQ + V D + FYEK G E+ + E+K + + G + + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYKYTIAMMGYGPEDK-FPV 270
>At3g24820.1 68416.m03114 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 186
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +3
Query: 126 EVEADQLGDEWKGYVLRVACGNDKQGFPMKHGVLTNSRVRLLMQRATHVTDRAAME 293
EV + LGDE G D + KH VL S+ + L Q + R E
Sbjct: 68 EVSVNPLGDEDNGMSSSANVKKDLSDWQEKHAVLVLSKSKELSQLRFKLCPRVLKE 123
>At3g07930.3 68416.m00970 HhH-GPD base excision DNA repair family
protein
Length = 445
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 200 RIPDETWRPDKQPCS 244
+ PD TW P + PC+
Sbjct: 301 KTPDNTWVPPRSPCN 315
>At3g07930.2 68416.m00969 HhH-GPD base excision DNA repair family
protein
Length = 358
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 200 RIPDETWRPDKQPCS 244
+ PD TW P + PC+
Sbjct: 301 KTPDNTWVPPRSPCN 315
>At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family
protein
Length = 352
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 200 RIPDETWRPDKQPCS 244
+ PD TW P + PC+
Sbjct: 301 KTPDNTWVPPRSPCN 315
>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1122
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 285 RRGL*HEWPFASEDEHGCL 229
+ G EWP AS+DE G L
Sbjct: 327 KNGWSKEWPLASDDERGKL 345
>At1g55990.1 68414.m06423 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 139
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 230 KQPCSSSDAKGHSCYRPRRDGER 298
K C + D G C+R RR+ E+
Sbjct: 87 KDGCGNVDGNGGCCWRRRREAEQ 109
>At1g21760.1 68414.m02724 F-box family protein Contains PF|00646
F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and
gb|T88189 come from this gene similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 328
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 262 ALCIRRRTRLFVRTPCFIGNPCL 194
A C+ R+ R VR P F N CL
Sbjct: 82 ASCVCRKWRYTVRNPMFWRNACL 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,760,322
Number of Sequences: 28952
Number of extensions: 127132
Number of successful extensions: 380
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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