Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30668.Seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    30   0.36 
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    29   0.84 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    28   1.1  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   2.6  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   3.4  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   4.5  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   5.9  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 48  IVFYIILVVQARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 194
           I FY+     AR +I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 308 IPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 425 FMNVVPNLLILVPIFLFALLHAASYSLTSLI 517
           F+ V+PN+ +L+P F+   +  + Y L ++I
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAII 133


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 439 AQFVNIGANLFICAATRRFVFLDFLDTLG 525
           A  +++  + F+C    RF+F+ F  TLG
Sbjct: 292 ASIISVEYHAFVCQGPLRFIFIAFTGTLG 320


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 349 DLPLAGFHGEVLPGGQRSLFILFTHFHERRAQFVNIGANLFICAATRRFVFLDFL 513
           DL +     E+L  G   L I  T F E R+ F     N  +CAA R+FV +D++
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFV-MDYV 165


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +2

Query: 260 NNPVSAFYKALLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVV 439
           N+P+  FY  L   A   A ++H+ + +    L RD +    L+    Y+  S  F++  
Sbjct: 88  NSPLCVFYSTLGGTAERYAKQVHEELSS---LLQRDDIQLLNLD----YVDLSEYFVSCP 140

Query: 440 PNLLILVPIFLFALLHAASYSLTSL 514
            N + LV +  + +  +  Y L+SL
Sbjct: 141 ENAIYLVVLPSYEIESSIDYYLSSL 165


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 353 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 451
           S S++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 194 RSSLGGPRNHRAVYHWIR 247
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,214
Number of Sequences: 5004
Number of extensions: 58683
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)