Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30668.Seq
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0186 - 15582925-15584334                                         29   3.5  
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592...    28   6.1  
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    28   8.1  
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396...    28   8.1  

>10_08_0186 - 15582925-15584334
          Length = 469

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 476 ALLHAASYSLTSLIL-LVKIRCGWARLAHLPGRVPVAE 586
           AL HA   + T   L +V++  GW R A +PG  PVAE
Sbjct: 341 ALAHAPRRTRTDADLGMVEVDKGWTRWAVVPGWGPVAE 378


>03_03_0071 +
           14257840-14257953,14259031-14259167,14259196-14259246,
           14260396-14260499,14260887-14261020
          Length = 179

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 389 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 490
           ED   +L + LIFM  +  +LIL  +F+  + HA
Sbjct: 71  EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 549 VWLISLVEFQSRNILRAAALAED--RAVPGRNSSWALFGHCGL 671
           VW+  LV     +   AAALAED    V      WALF HCG+
Sbjct: 725 VWVHLLVHIAPSS--DAAALAEDLKSGVEFVTVIWALFCHCGI 765


>07_03_1174 +
           24538522-24538682,24539229-24539430,24539529-24539675,
           24539832-24539944,24540580-24540791,24541194-24541258,
           24541581-24541751,24542543-24542887,24542980-24543173,
           24543292-24543448,24543946-24544010,24544166-24544331
          Length = 665

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 392 PPGRTSP*NPARGRSLVLEFFDVAAALKSQRSRVTLCRMPTLDC*TWE-HVSNGTQHGDY 216
           PPG  +  N A G  L       A  L ++R+ + + ++  +D   W+ H  NGTQ   Y
Sbjct: 140 PPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVD---WDVHHGNGTQKMFY 196

Query: 215 ADP 207
           +DP
Sbjct: 197 SDP 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,977,316
Number of Sequences: 37544
Number of extensions: 417847
Number of successful extensions: 1079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)