Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30668.Seq
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    72   3e-13
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    35   0.063
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine re...    30   1.8  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine re...    29   3.2  
Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.2  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.2  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 33/76 (43%), Positives = 50/76 (65%)
 Frame = +2

Query: 272 SAFYKALLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 451
           SA+YK   A+AAT ALRLH RI   + +L+  F+ R  +EDS HYL YS++F+   P  +
Sbjct: 77  SAYYKIFAASAATFALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSM 135

Query: 452 ILVPIFLFALLHAASY 499
             +P+ ++A LHA ++
Sbjct: 136 AALPVTIYAALHACTF 151


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = +2

Query: 239 WIRVPMFNNPVSAFYKALLANAATSAL-RLHQRIPAREISLSRDFMARFFLEDSAHYLFY 415
           ++ V   + P++A Y  L   A+   L +L   +  R ISL R+F+   +++ + H +F 
Sbjct: 194 FVGVAASSQPLAAVYFGLSVYASKLGLQKLKASLSQRTISLQRNFLHSLYIQTAVHVIFI 253

Query: 416 SLIFMNVVPNLLILVPIFLFALLHAASY---SLTSLILLV 526
           S+       + +I +P  +  +L A      SL++L L++
Sbjct: 254 SIPLGIFFLSFIIWIPSNMSYILTAMCTQHGSLSTLALMI 293


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 310 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 423
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 628 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 665


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 310 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 423
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 577 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 614


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 310 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 423
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 575 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 612


>AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine
           receptor, class n protein1 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 392 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTSLILLVK 529
           ++  +L    +F N++P ++I  P+FL A     SY   +   L+K
Sbjct: 247 ETHRHLTLLALFQNLIPAVVIAFPVFLVAFSFVMSYESDTFAELIK 292


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 98  NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 217
           + YGR  ++SRR +  ++ PS  S+ H   N R+SL  P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199


>AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein28 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 171 HIIANKIDVALWGVRVITVLCTIGYVFPCLTIQCRHSTKRYSRTLRL 311
           ++I N +DV LW + +  VL   G+  P L   C + T R     RL
Sbjct: 263 YVIMNFVDVPLWIIMMGHVLWQFGHGAPVLIYLCLNRTLRSGLLRRL 309


>Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical
           protein C31A11.9 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +2

Query: 407 LFYSLIFMNVVPNLLILVPI---FLFALLHAASYSLTSLI 517
           LFY+L+   ++P  L+ +P+   F+F+L+   + S +S++
Sbjct: 250 LFYALVAQTMIPVFLMHIPVLTMFIFSLMEIDAGSFSSIV 289


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 307 DFSAAATSKNSSTRDLPLAGFHGEV 381
           +F   +TS     +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 77  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 181
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 77  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 181
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 77  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 181
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 77  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 181
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 407 LFYSLIFMNVVPNLLILVP 463
           LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257


>Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical
           protein T09E11.8 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 257 TWEHVSNGTQHGDYADPPKSYVYF 186
           TW++++   ++ +Y + PKSY +F
Sbjct: 476 TWKNINRRGRYNNYFEKPKSYSFF 499


>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 407 LFYSLIFMNVVPNLLILVPIFLFAL 481
           LFYSL+   ++P +L+ +PI ++ L
Sbjct: 241 LFYSLVLQTLIPFVLMHIPITIYYL 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,883
Number of Sequences: 27780
Number of extensions: 333183
Number of successful extensions: 1204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)