Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30668.Seq
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.52 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.68 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.68 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   6.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 404 YLFYSLIFMNVVPNLLILVPIF 469
           +LF  LIF++V  N+L+ V I+
Sbjct: 30  FLFLILIFLSVAGNILVCVAIY 51


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 522 WSKFVVGGLVWLISLVEFQSRNI 590
           WS F+   LV++I L+ F  RNI
Sbjct: 399 WSAFLCISLVYIIMLIIFIPRNI 421


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 47  EIIARAEFLQPGGS 6
           EI A+ EFL PGGS
Sbjct: 63  EIYAKCEFLNPGGS 76


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 98  NQYGRSKSASRRH-WSTKRHPSLESSHHCQ*NRRSSLGGPRNHRAVYH 238
           N+   S +  RRH  +    PS E   +      SSL   RNH+++YH
Sbjct: 9   NKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 416 SLIFMNVVPNLLILVPIFLF-ALLHAASYSLTSL 514
           S+I   V+ N+L+ V +FL   L    +Y L SL
Sbjct: 50  SIIVGTVIGNILVCVAVFLVRKLRRPCNYLLVSL 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 290 TLCRMPTLDC*TWEHVSNGTQHGDYADPPKS 198
           TL R P+    T  H SNG  H      P+S
Sbjct: 357 TLERTPSKCSQTSVHYSNGQTHSQLCPTPRS 387


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 537 VGGLVWLISLVEFQSRNILRAAA 605
           V G VW +  VEF  R   RA +
Sbjct: 568 VKGAVWTVDEVEFYKRRPQRACS 590


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 320 RLHQRIPAREISLSR 364
           RLH R+P R  +L R
Sbjct: 108 RLHSRLPGRNFNLLR 122


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 641 IMGIVRSLRLDESVRIL 691
           + GIVRSL LD+  RI+
Sbjct: 309 VPGIVRSLVLDKLARIV 325


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 406 IVSAVLQEEPRHEIPREGD 350
           +V+ VLQ  P  E+ + GD
Sbjct: 26  LVNTVLQPRPSFELSKNGD 44


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 406 IVSAVLQEEPRHEIPREGD 350
           +V+ VLQ  P  E+ + GD
Sbjct: 28  LVNTVLQPRPSFELSKNGD 46


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 367 FHGEVLPGGQRSLFILFTHFHERRAQF 447
           F   +L     SLF++  HF   R +F
Sbjct: 278 FVNNILAASACSLFVVIFHFAHPREEF 304


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 188 FIGNDVSFQGWDAFWWTSVACLLI 117
           F  ND+ +QG     WT  +   I
Sbjct: 285 FQANDIQYQGASDILWTQASAKAI 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 606  LAEDRAVPGRNSSWALFGHCGLMSPF 683
            L E    P R +     GH GL++P+
Sbjct: 1916 LIERNEAPSRQTGSGHGGHGGLLTPY 1941


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,626
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)