Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30668.Seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    30   1.3  
At5g61160.1 68418.m07673 transferase family protein similar to a...    28   6.8  
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    28   6.8  
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    27   8.9  
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    27   8.9  

>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 182 GNDVSFQGWDAFWWTSVAC 126
           GN V  QGW+  WW+   C
Sbjct: 38  GNKVCTQGWECSWWSKYCC 56


>At5g61160.1 68418.m07673 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 452

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 328 SKNSSTRDLPLAGFHGEVLPGGQRSLFILFTHF 426
           +++SS+RD+    F+  +LP  +RSL ++ THF
Sbjct: 47  TESSSSRDV----FYSSILPKLERSLSLILTHF 75


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 569 DQGDEPDEPTHNEF*PRVSRKSRNTKRR 486
           D  +  DE   +E+ PR SRK R+ K+R
Sbjct: 13  DDSEMEDEDEEDEYEPRSSRKGRSGKKR 40


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 232 VPLDTCSHV*QSSVGILQSVTRERCDFSAAATSKNSST 345
           VP  T +++ Q  + I +  TRE  DFSA      S T
Sbjct: 210 VPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRT 247


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 83  NFNTLNQYGRSKSASRRHWSTKRHPSLE 166
           +F +  Q G   S+S++HW  +R P  E
Sbjct: 401 HFASWRQLGHLLSSSKKHWGMRRQPKSE 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,674
Number of Sequences: 28952
Number of extensions: 311474
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)