Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30667.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0355 - 22492162-22492311,22492414-22492698,22492798-224931...    30   2.2  
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677...    29   3.0  
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802...    29   3.0  
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996...    28   6.9  
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592...    28   6.9  
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908...    28   9.1  
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    28   9.1  

>09_06_0355 -
           22492162-22492311,22492414-22492698,22492798-22493125,
           22493523-22493674,22493878-22493969,22495948-22496107
          Length = 388

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -1

Query: 322 RGRSLVLEFFDVAAALKSQRSRVRFVECRHWIV--KQWEHVSNGTQHGDYADPPKSYVYF 149
           +GR LV  F+D+  ALK    R+   E    +V  ++WE        GD++      V  
Sbjct: 317 KGRPLV--FYDITLALKKLHKRIFLAEIGRHVVGDREWEVYRVHLGEGDHSSLRSKIVDG 374

Query: 148 IGNDVSFQGWD 116
           + N     GWD
Sbjct: 375 VTN--MLMGWD 383


>05_02_0116 +
           6773659-6774437,6775103-6775298,6775381-6775565,
           6775746-6776079,6776174-6776378,6776692-6776834,
           6777081-6777233
          Length = 664

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +2

Query: 512 SAHLPGRVPVAEHPPGRGARRDRAVPGRTHHGHCSVTAA 628
           S  LP   PV   PP R ARRD    G  ++GH SV  A
Sbjct: 119 SGRLPTTPPV---PPPRAARRDVLGSGTGNYGHGSVVRA 154


>02_02_0223 -
           8021040-8021247,8022275-8022367,8022808-8023059,
           8023143-8023597,8023667-8023983,8024019-8024298,
           8024423-8024728,8024762-8025130,8025216-8025455
          Length = 839

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGND-VSFQGW 119
           VK W+HVSNG +   + +  K + +  G++  S++GW
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAASWRGW 208


>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
            25999880-25999989,26000155-26000311,26000390-26000915,
            26001101-26001265,26002470-26002589,26003022-26003093,
            26003422-26003499,26003965-26004057,26004491-26004647,
            26005351-26005589,26006907-26007050,26007637-26007666,
            26010610-26010993,26011486-26011554,26012353-26012418,
            26013166-26013255,26013583-26013628,26014318-26014419,
            26014552-26014694
          Length = 1195

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 237  DTGLLNNGNTYPMVHSTVITRTPQRATSILL 145
            DT  +N+GNT P  + T+ + TP + T  L+
Sbjct: 974  DTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004


>03_03_0071 +
           14257840-14257953,14259031-14259167,14259196-14259246,
           14260396-14260499,14260887-14261020
          Length = 179

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 352 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 453
           ED   +L + LIFM  +  +LIL  +F+  + HA
Sbjct: 71  EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104


>12_01_0919 -
           9086879-9087064,9087842-9087923,9088357-9089553,
           9089598-9089961,9090086-9090188,9090234-9090479
          Length = 725

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 131
           VK W+HVSNG +   + +  K + +  G++++
Sbjct: 146 VKDWDHVSNGDKEVLWKELKKIFQFLDGSEIA 177


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 201 LDTCSHCLTIQCRHSTKRTRERCDFSAAATSKNSSTRDL 317
           L  CSH + I+C     R  E C F    + K   +RDL
Sbjct: 175 LPNCSHAMCIKCYRDWYRRSESCPF-CRGSLKRIRSRDL 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,257,770
Number of Sequences: 37544
Number of extensions: 449152
Number of successful extensions: 1421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)