Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30667.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       30   1.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  30   2.3  

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 207 TCSHCLTIQCRHSTK-----RTRERCDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLF 371
           TC HC  I  R+ST       T      +AAA+S +SS+       +H   L    ++L+
Sbjct: 165 TCQHCWRILARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHYHRHHLHHHHKALY 224

Query: 372 ILFTHFHERRAQ--FVNIGANLFICA 443
            L  H     AQ  + N G+ L  CA
Sbjct: 225 KLRQHTPTLLAQQCWRNTGSELGRCA 250


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 563  RGPEDVPRLELDQGDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGTNINKLGTTFMKM 384
            +G ++VP++    G  +TT H    P VS+     + +  +  +K GT  +K  T++ K 
Sbjct: 914  KGTKEVPKISSSHGSHETTPHINGAP-VSKTSNSTQNSTEATTRKTGTPTSK--TSYSKQ 970

Query: 383  S 381
            S
Sbjct: 971  S 971


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,444,254
Number of Sequences: 59808
Number of extensions: 485372
Number of successful extensions: 1627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)