Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30667.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    85   7e-17
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    32   0.38 
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    29   4.6  
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine re...    29   4.6  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.6  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.6  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL023837-3|CAB63348.2|  283|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    28   6.1  
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    28   8.1  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 50/154 (32%), Positives = 72/154 (46%)
 Frame = +1

Query: 259 ANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLF 438
           A+AAT ALRLH RI   + +L+  F+ R  +EDS HYL YS++F+   P  +  +P+ ++
Sbjct: 85  ASAATFALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIY 143

Query: 439 ALLHAASYSLTILDTLGQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFG 618
           A LHA ++   IL   G +                                        G
Sbjct: 144 AALHACTFMTKILRETG-HTSSIIPKLEQFTAHQTQNALGIIACSEIFLVPLLVSLIFSG 202

Query: 619 HCGLMSPFVYYYFVTWRYASGRNPYTRNTFRELR 720
              L+ PF YY F++ RYAS RNP TR  F ++R
Sbjct: 203 KGSLLLPFAYYRFLSLRYASRRNPSTRQAFAQMR 236


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 198 PLDTCSHCLTIQCRHST-KRTRERCDFSAAATSKNSSTR 311
           PL TC HC    C  S  KR R  C  +A+++S ++++R
Sbjct: 724 PLFTCEHCARQLCSMSNLKRHRATCKVAASSSSNSAASR 762


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 273 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 386
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 628 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 665


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 273 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 386
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 577 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 614


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 273 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 386
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 575 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 612


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 61  NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 180
           + YGR  ++SRR +  ++ PS  S+ H   N R+SL  P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +1

Query: 283 RLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASY 462
           +L   +  R ISL R+F+   +++ + H +F S+       + +I +P  +  +L A   
Sbjct: 222 KLKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIFFLSFIIWIPSNMSYILTAMCT 281

Query: 463 SLTILDTL 486
               L TL
Sbjct: 282 QHGSLSTL 289


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 270 DFSAAATSKNSSTRDLPLAGFHGEV 344
           +F   +TS     +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine
           receptor, class n protein1 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = +1

Query: 211 VPIV*QSSVGILQSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIF 390
           VP++    VG+    ++N   S L + + I  R+ ++S      F   ++  +L    +F
Sbjct: 206 VPLLLSVVVGLAAIYVSNLCGSRL-VWKAIDRRKNNMS------FKSYETHRHLTLLALF 258

Query: 391 MNVVPNLLILVPIFLFALLHAASY 462
            N++P ++I  P+FL A     SY
Sbjct: 259 QNLIPAVVIAFPVFLVAFSFVMSY 282


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 524 GDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGTNI 414
           G     T+N+   +V+  V+EY  + +S    +GTNI
Sbjct: 368 GSAYVNTYNKIHKKVNPDVREYSLSAASMGNSLGTNI 404


>AL023837-3|CAB63348.2|  283|Caenorhabditis elegans Hypothetical
           protein Y37H2C.4 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 241 ILQSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLIL 420
           IL S  A+    A+R +Q I  +  +L     A   L+     LFYSLI  + +P+ L+ 
Sbjct: 162 ILGSSFASVIYFAIRCYQYISNQLGTLPTQSQA---LKSLQVQLFYSLILQSAIPSFLMY 218

Query: 421 VPIFLFALLHAASYSLTI 474
           +P  +  ++   ++   +
Sbjct: 219 LPATIVYIVPMLNFGYNV 236


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 524 GDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGTNI 414
           G     T+N+   +V+  V+EY  + +S    +GTNI
Sbjct: 368 GSAYVNTYNKIHKKVNPDVREYSLSAASMGNSLGTNI 404


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 408 FVNIGANLFICAATRRFVFLDYP*YSWSK 494
           FV++G ++FI  A   F+F D P  SW++
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 370 LFYSLIFMNVVPNLLILVP 426
           LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,605
Number of Sequences: 27780
Number of extensions: 357612
Number of successful extensions: 1385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)