Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30667.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    31   0.015
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.57 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.0  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   7.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   7.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +3

Query: 600 IMGIVRSLRLDESVRILLLRDVEVRXGPEPVHP 698
           + GIVRSL LD+  RI+LL   E R   EPV P
Sbjct: 309 VPGIVRSLVLDKLARIVLLNFQEERRS-EPVEP 340


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 367 YLFYSLIFMNVVPNLLILVPIF 432
           +LF  LIF++V  N+L+ V I+
Sbjct: 30  FLFLILIFLSVAGNILVCVAIY 51


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 61  NQYGRSKSASRRH-WSTKRHPSLESSHHCQ*NRRSSLGGPRNHRAVYH 201
           N+   S +  RRH  +    PS E   +      SSL   RNH+++YH
Sbjct: 9   NKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 271 SQRSRVRFVECRHWIVKQWEHVSNGTQHGDYADP 170
           S RS+  F+   H     W   +    HGD+ DP
Sbjct: 125 SNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDP 158


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 271 SQRSRVRFVECRHWIVKQWEHVSNGTQHGDYADP 170
           S RS+  F+   H     W   +    HGD+ DP
Sbjct: 125 SNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDP 158


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 271 SQRSRVRFVECRHWIVKQWEHVSNGTQHGDYADP 170
           S RS+  F+   H     W   +    HGD+ DP
Sbjct: 176 SNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDP 209


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 271 SQRSRVRFVECRHWIVKQWEHVSNGTQHGDYADP 170
           S RS+  F+   H     W   +    HGD+ DP
Sbjct: 125 SNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDP 158


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 283 RLHQRIPAREISLSR 327
           RLH R+P R  +L R
Sbjct: 108 RLHSRLPGRNFNLLR 122


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 369 IVSAVLQEEPRHEIPREGD 313
           +V+ VLQ  P  E+ + GD
Sbjct: 26  LVNTVLQPRPSFELSKNGD 44


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 369 IVSAVLQEEPRHEIPREGD 313
           +V+ VLQ  P  E+ + GD
Sbjct: 28  LVNTVLQPRPSFELSKNGD 46


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 524 GDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGTNI 414
           G+ +  T+N   P+V   VK +   C+  N    +N+
Sbjct: 131 GNSRANTYNFDYPQVPYTVKNFHPRCAVNNYNDPSNV 167


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 330 FHGEVLPGGQRSLFILFTHFHERRAQF 410
           F   +L     SLF++  HF   R +F
Sbjct: 278 FVNNILAASACSLFVVIFHFAHPREEF 304


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 151 FIGNDVSFQGWDAFWWTSVACLLI 80
           F  ND+ +QG     WT  +   I
Sbjct: 285 FQANDIQYQGASDILWTQASAKAI 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,626
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)